Detailed information NTG0974165

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: AABD46_RS01755
• Genome accession: NZ_CP150947
• Coordinates: 368199..369215 (+)
• Length: 338 a.a.
• NCBI ID: WP_017449463.1
• Uniprot ID: A0A7Y0SFN2
• Organism: Vibrio parahaemolyticus strain vp-HL-202212
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 363199..374215

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD46_RS01740 (AABD46_01740)	-	363623..364351 (-)	729	WP_015297397.1	redoxin family protein	-
AABD46_RS01745 (AABD46_01745)	oxyR	364522..365430 (+)	909	WP_159404022.1	DNA-binding transcriptional regulator OxyR	-
AABD46_RS01750 (AABD46_01750)	-	365486..368056 (-)	2571	WP_005480476.1	PBP1A family penicillin-binding protein	-
AABD46_RS01755 (AABD46_01755)	pilM	368199..369215 (+)	1017	WP_017449463.1	type IV pilus assembly protein PilM	Machinery gene
AABD46_RS01760 (AABD46_01760)	pilN	369199..369777 (+)	579	WP_005480484.1	PilN domain-containing protein	Machinery gene
AABD46_RS01765 (AABD46_01765)	pilO	369770..370363 (+)	594	WP_005480482.1	type 4a pilus biogenesis protein PilO	Machinery gene
AABD46_RS01770 (AABD46_01770)	pilP	370353..370868 (+)	516	WP_159404023.1	pilus assembly protein PilP	Machinery gene
AABD46_RS01775 (AABD46_01775)	pilQ	370900..372648 (+)	1749	WP_005488227.1	type IV pilus secretin PilQ family protein	Machinery gene
AABD46_RS01780 (AABD46_01780)	aroK	372837..373355 (+)	519	WP_005381319.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 37748.26 Da
• Isoelectric Point: 6.8322

>NTDB_id=974165 AABD46_RS01755 WP_017449463.1 368199..369215(+) (pilM) [Vibrio parahaemolyticus strain vp-HL-202212]
MDKLIVTGIDIGHNSLKAVVLKPIGDQYALLGYKEILLKEGIVAENNTINHQEIVKTLKQMKKDLPFGAKRVAISVPDNS
VISKKLQIEQSLDESEIEFAVVQAFSHQSPFPVEELSLDFVRLRAEEGMRGTDSYQVFATRKDVVESRVEALQQSGLKPV
LVDVHSQSLGHIWKLAAERFPEKNKYCLLDIGSLASSFTMFTEQGELFHKEFACGTRISMGTSQEDLLSDDAQAKTEQFN
RQVVERVKRQMQLYTSINGSQNIKGIWLSGEGASTPMLAEELSHQLALECELLNPLGLFEMKVSKRKRRAADWQHFSTAA
GLAVRGIHWLGGVRAVSH

Nucleotide

• Length: 1017 bp

>NTDB_id=974165 AABD46_RS01755 WP_017449463.1 368199..369215(+) (pilM) [Vibrio parahaemolyticus strain vp-HL-202212]
ATGGATAAGCTAATCGTTACCGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTAGTACTTAAACCCATTGGCGATCA
ATACGCCTTACTGGGTTACAAAGAAATATTACTTAAGGAAGGTATTGTCGCTGAAAATAACACTATAAATCATCAAGAAA
TTGTAAAGACCCTAAAGCAGATGAAAAAAGATCTGCCTTTTGGGGCCAAGCGAGTGGCAATTTCTGTTCCAGACAACTCA
GTTATTAGCAAGAAACTGCAAATCGAACAAAGCCTTGATGAGAGCGAAATCGAGTTTGCGGTGGTACAAGCTTTTTCTCA
TCAATCTCCTTTTCCTGTGGAAGAACTGAGTTTGGATTTCGTACGCCTTCGTGCGGAAGAAGGGATGCGTGGAACGGACA
GTTATCAAGTATTCGCTACGCGCAAAGATGTGGTTGAAAGCCGAGTTGAGGCGTTACAACAGTCTGGTTTAAAGCCTGTG
TTGGTTGACGTGCACTCTCAAAGTCTAGGTCATATCTGGAAGCTTGCCGCAGAGCGTTTTCCTGAAAAAAACAAATACTG
TTTGTTAGACATCGGCTCGTTAGCGAGTTCATTCACCATGTTTACCGAGCAAGGCGAACTGTTTCATAAGGAGTTTGCGT
GCGGTACTCGTATTTCAATGGGGACGTCACAAGAAGACTTACTTTCTGATGATGCTCAAGCCAAAACGGAACAGTTCAAT
CGTCAAGTGGTTGAGCGCGTAAAACGTCAAATGCAGCTCTATACGTCGATCAACGGTTCGCAAAACATCAAAGGCATTTG
GTTATCGGGCGAGGGGGCATCGACGCCAATGTTGGCAGAAGAGCTGTCGCATCAGTTGGCATTGGAGTGCGAGTTGCTAA
ACCCACTCGGATTGTTTGAAATGAAAGTGTCGAAACGCAAGCGCCGAGCGGCCGATTGGCAACATTTTTCGACAGCTGCA
GGGCTGGCGGTCCGTGGCATTCATTGGTTAGGAGGTGTGCGTGCTGTATCGCATTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (8-326)

3D structure

• AlphaFold DB: A0A7Y0SFN2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio campbellii strain DS40M4	84.911	100	0.849
pilM	Vibrio cholerae strain A1552	48.368	99.704	0.482