Detailed information NTG0973787

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AABM54_RS22170
• Genome accession: NZ_CP150918
• Coordinates: 4941120..4942466 (+)
• Length: 448 a.a.
• NCBI ID: WP_347902088.1
• Uniprot ID: -
• Organism: Pseudomonas purpurea strain DGS26
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4936120..4947466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABM54_RS22145	pgeF	4936327..4937052 (-)	726	WP_347902083.1	peptidoglycan editing factor PgeF	-
AABM54_RS22150	rluD	4937049..4938011 (-)	963	WP_347902084.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
AABM54_RS22155	-	4938163..4939185 (+)	1023	WP_347902085.1	outer membrane protein assembly factor BamD	-
AABM54_RS22160	-	4939311..4939544 (+)	234	WP_347902086.1	PP0621 family protein	-
AABM54_RS22165	pilS	4939534..4941123 (+)	1590	WP_347902087.1	ATP-binding protein	Regulator
AABM54_RS22170	pilR	4941120..4942466 (+)	1347	WP_347902088.1	sigma-54 dependent transcriptional regulator	Regulator
AABM54_RS22175	thiO	4942619..4943719 (-)	1101	WP_347902089.1	glycine oxidase ThiO	-
AABM54_RS22180	-	4943777..4944178 (-)	402	WP_347902090.1	type IV pilin protein	-
AABM54_RS22185	-	4944194..4947304 (-)	3111	WP_347902091.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49824.27 Da
• Isoelectric Point: 7.0296

>NTDB_id=973787 AABM54_RS22170 WP_347902088.1 4941120..4942466(+) (pilR) [Pseudomonas purpurea strain DGS26]
MKTSPRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNVGEARGLLAQEAFDLCLTDMRLPDGTGMELVQYIQQRYPQVP
VAMITAYGSLEVAINALKAGAFDFLTKPVDLLRLRELVSSALRLPPTGAASTALDRRLLGDSLPMRSLRRQVDKLARSQA
PVYISGESGSGKELVARLIHDQGPRANQSFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQVAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERRDDIELLA
GNVLKRLAAGSGLPAARLHPQALDALKNYRFPGNVRELENMLERAHTLCENKQIETGDLRLADGNCSAEPGAPDLTQIDN
LEDYLENIERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=973787 AABM54_RS22170 WP_347902088.1 4941120..4942466(+) (pilR) [Pseudomonas purpurea strain DGS26]
TTGAAGACAAGCCCACGGCAAAAAGTCCTGATCGTCGATGATGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
CCGGATGAAACTCGACACTTTCAGCGCCCGCAATGTCGGCGAGGCCCGCGGTTTGCTGGCTCAGGAAGCGTTTGACCTGT
GCCTGACCGACATGCGCCTGCCGGATGGAACCGGCATGGAACTGGTGCAATACATCCAGCAACGTTATCCACAGGTGCCG
GTGGCGATGATTACCGCCTACGGCAGCCTCGAAGTCGCGATCAATGCCCTCAAGGCCGGGGCCTTCGACTTTCTGACCAA
ACCGGTCGATCTGCTGCGTTTGCGTGAGCTGGTCAGCAGCGCCTTGCGCCTGCCTCCAACCGGCGCGGCGAGTACCGCCC
TCGACCGGCGCCTGCTGGGCGACTCGTTACCTATGCGCAGCCTGCGCCGGCAAGTCGACAAACTGGCCCGCAGCCAGGCT
CCGGTGTACATCAGCGGCGAGTCCGGCAGCGGCAAGGAGTTGGTGGCACGGCTGATCCACGACCAGGGTCCGCGTGCGAA
CCAATCCTTTGTGCCAGTCAACTGTGGGGCGATTCCGTCCGAGTTGATGGAAAGCGAGTTCTTTGGCCATCGAAAAGGCA
GTTTCAGCGGCGCTATCGAGGACAAACCAGGATTGTTCCAGGTGGCCCACGGCGGCACGCTGTTTCTTGACGAGGTCGCC
GACCTGCCGCTGGCCATGCAAGTCAAGTTGCTGCGGGCGATCCAGGAGAAAGCCGTGCGCAGCGTTGGCGGCCAACAGGA
AACAGTGGTCGACGTGCGAATCCTTTGCGCAACTCACAAGGACCTGGATGCCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATTTGTACTACCGCTTGAATGTCATCGAGCTACGCGTTCCGCCCTTGCGCGAACGCCGAGACGATATCGAGCTGCTGGCC
GGCAACGTGCTCAAGCGTCTGGCAGCAGGCAGTGGCTTGCCGGCCGCCCGCCTCCACCCTCAAGCACTGGACGCCCTGAA
AAACTATCGTTTCCCGGGCAATGTGCGTGAACTGGAGAACATGCTCGAACGGGCCCACACCCTGTGCGAGAACAAGCAGA
TCGAAACCGGCGACTTGCGCCTGGCGGACGGAAATTGCAGCGCCGAGCCCGGCGCACCGGACCTGACGCAAATCGACAAC
CTTGAGGACTATCTGGAAAACATCGAGCGCAAACTGATCCTTCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCTCAGCGCTTGAACTTGTCGTTCCGGTCGATGCGCTACAGGCTCAAGAAATTAGGACTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.813	98.884	0.799
pilR	Acinetobacter baumannii strain A118	50.109	100	0.513