Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AABD49_RS15845 Genome accession   NZ_CP150909
Coordinates   3328503..3329228 (+) Length   241 a.a.
NCBI ID   WP_069537266.1    Uniprot ID   A0AA47JGR9
Organism   Vibrio parahaemolyticus strain vp-HL-202008     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3323503..3334228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD49_RS15830 (AABD49_15830) - 3324606..3326927 (+) 2322 WP_069537262.1 Tex family protein -
  AABD49_RS15835 (AABD49_15835) - 3327063..3327527 (-) 465 WP_005459035.1 hypothetical protein -
  AABD49_RS15840 (AABD49_15840) bioH 3327651..3328418 (-) 768 WP_029817775.1 pimeloyl-ACP methyl ester esterase BioH -
  AABD49_RS15845 (AABD49_15845) comF 3328503..3329228 (+) 726 WP_069537266.1 phosphoribosyltransferase family protein Machinery gene
  AABD49_RS15850 (AABD49_15850) nfuA 3329326..3329910 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  AABD49_RS15855 (AABD49_15855) nudE 3330131..3330700 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  AABD49_RS15860 (AABD49_15860) cysQ 3330741..3331568 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AABD49_RS15865 (AABD49_15865) - 3331855..3332616 (-) 762 WP_020904372.1 type II secretion system protein N -
  AABD49_RS15870 (AABD49_15870) - 3332618..3333109 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27646.76 Da        Isoelectric Point: 8.7043

>NTDB_id=973704 AABD49_RS15845 WP_069537266.1 3328503..3329228(+) (comF) [Vibrio parahaemolyticus strain vp-HL-202008]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQSFKDHGQTWHVHALTQLLAQRILTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=973704 AABD49_RS15845 WP_069537266.1 3328503..3329228(+) (comF) [Vibrio parahaemolyticus strain vp-HL-202008]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCTCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAAAGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGCGCATTTTAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment