Detailed information NTG0973657

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABD47_RS15200
• Genome accession: NZ_CP150902
• Coordinates: 3201988..3202995 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain vp-HL-202006
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3196988..3207995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD47_RS15180 (AABD47_15180)	rplC	3197522..3198151 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
AABD47_RS15185 (AABD47_15185)	rpsJ	3198166..3198477 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
AABD47_RS15190 (AABD47_15190)	rpmE	3198935..3199156 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
AABD47_RS15195 (AABD47_15195)	priA	3199451..3201655 (+)	2205	WP_029824531.1	primosomal protein N'	-
AABD47_RS15200 (AABD47_15200)	cytR	3201988..3202995 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
AABD47_RS15205 (AABD47_15205)	ftsN	3203172..3203717 (+)	546	WP_005481405.1	cell division protein FtsN	-
AABD47_RS15210 (AABD47_15210)	hslV	3203882..3204433 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
AABD47_RS15215 (AABD47_15215)	hslU	3204457..3205788 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
AABD47_RS15220 (AABD47_15220)	-	3206212..3206436 (-)	225	WP_005489715.1	hypothetical protein	-
AABD47_RS15225 (AABD47_15225)	-	3206596..3206745 (-)	150	WP_005489496.1	AlpA family phage regulatory protein	-
AABD47_RS15230 (AABD47_15230)	radC	3206916..3207389 (+)	474	WP_025792561.1	DNA repair protein RadC	-
AABD47_RS15235 (AABD47_15235)	-	3207386..3207817 (+)	432	WP_017633432.1	DUF2787 family protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=973657 AABD47_RS15200 WP_005481416.1 3201988..3202995(+) (cytR) [Vibrio parahaemolyticus strain vp-HL-202006]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=973657 AABD47_RS15200 WP_005481416.1 3201988..3202995(+) (cytR) [Vibrio parahaemolyticus strain vp-HL-202006]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATTT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904