Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   WMY90_RS08580 Genome accession   NZ_CP150875
Coordinates   1646699..1647637 (+) Length   312 a.a.
NCBI ID   WP_022096535.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TCI125     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641699..1652637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS08560 (WMY90_08560) - 1643364..1644371 (+) 1008 Protein_1636 peptide ABC transporter substrate-binding protein -
  WMY90_RS08565 (WMY90_08565) - 1644379..1644597 (+) 219 Protein_1637 ABC transporter permease subunit -
  WMY90_RS08570 (WMY90_08570) - 1644608..1645641 (+) 1034 Protein_1638 ABC transporter permease -
  WMY90_RS08575 (WMY90_08575) - 1645655..1646697 (+) 1043 Protein_1639 ABC transporter ATP-binding protein -
  WMY90_RS08580 (WMY90_08580) amiF 1646699..1647637 (+) 939 WP_022096535.1 ATP-binding cassette domain-containing protein Regulator
  WMY90_RS08585 (WMY90_08585) - 1647859..1648047 (+) 189 WP_011225379.1 hypothetical protein -
  WMY90_RS08590 (WMY90_08590) hslO 1648194..1649060 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  WMY90_RS08595 (WMY90_08595) dusB 1649053..1650030 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  WMY90_RS08600 (WMY90_08600) - 1650233..1651096 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35217.75 Da        Isoelectric Point: 6.0530

>NTDB_id=973252 WMY90_RS08580 WP_022096535.1 1646699..1647637(+) (amiF) [Streptococcus thermophilus strain TCI125]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKPSDIDSGTVTFSGNGISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEHEAKVKELIDLVGLNEDHLSRYPYEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=973252 WMY90_RS08580 WP_022096535.1 1646699..1647637(+) (amiF) [Streptococcus thermophilus strain TCI125]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACCTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGGGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCATGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTTATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

52.459

97.756

0.513
  amiF Streptococcus thermophilus LMG 18311

52.131

97.756

0.51
  amiF Streptococcus salivarius strain HSISS4

51.803

97.756

0.506

Multiple sequence alignment