Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   WMZ02_RS00690 Genome accession   NZ_CP150864
Coordinates   148653..149378 (-) Length   241 a.a.
NCBI ID   WP_346338123.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143653..154378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMZ02_RS00665 (WMZ02_00665) - 144773..145264 (+) 492 WP_005458943.1 type II secretion system protein M -
  WMZ02_RS00670 (WMZ02_00670) - 145266..146027 (+) 762 WP_025535418.1 type II secretion system protein N -
  WMZ02_RS00675 (WMZ02_00675) cysQ 146313..147140 (-) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  WMZ02_RS00680 (WMZ02_00680) nudE 147181..147750 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  WMZ02_RS00685 (WMZ02_00685) nfuA 147971..148555 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  WMZ02_RS00690 (WMZ02_00690) comF 148653..149378 (-) 726 WP_346338123.1 phosphoribosyltransferase family protein Machinery gene
  WMZ02_RS00695 (WMZ02_00695) bioH 149463..150230 (+) 768 WP_029842181.1 pimeloyl-ACP methyl ester esterase BioH -
  WMZ02_RS00700 (WMZ02_00700) - 150354..150818 (+) 465 WP_005459035.1 hypothetical protein -
  WMZ02_RS00705 (WMZ02_00705) - 150954..153275 (-) 2322 WP_069539532.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27610.82 Da        Isoelectric Point: 9.1616

>NTDB_id=973157 WMZ02_RS00690 WP_346338123.1 148653..149378(-) (comF) [Vibrio parahaemolyticus strain NJIFDCVp7]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDQCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSGPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=973157 WMZ02_RS00690 WP_346338123.1 148653..149378(-) (comF) [Vibrio parahaemolyticus strain NJIFDCVp7]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCAATGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGGGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment