Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KDR_RS07025 Genome accession   NZ_CP150840
Coordinates   1398041..1398661 (+) Length   206 a.a.
NCBI ID   WP_027480036.1    Uniprot ID   -
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1393041..1403661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDR_RS07005 - 1393904..1394395 (+) 492 WP_010888024.1 DUF4142 domain-containing protein -
  KDR_RS07010 ychF 1394754..1395851 (+) 1098 WP_010888025.1 redox-regulated ATPase YchF -
  KDR_RS07015 - 1395915..1397030 (-) 1116 WP_010888026.1 N-acetylmuramoyl-L-alanine amidase -
  KDR_RS07020 - 1397205..1397858 (+) 654 WP_010888027.1 hypothetical protein -
  KDR_RS07025 comF 1398041..1398661 (+) 621 WP_027480036.1 ComF family protein Machinery gene
  KDR_RS07030 - 1398672..1399220 (-) 549 WP_010888029.1 DUF1684 domain-containing protein -
  KDR_RS07035 - 1399217..1399438 (-) 222 WP_027480037.1 RNA-binding S4 domain-containing protein -
  KDR_RS07040 - 1399651..1400586 (+) 936 WP_027480038.1 hypothetical protein -
  KDR_RS07045 - 1400643..1401356 (-) 714 WP_010888032.1 histidine phosphatase family protein -
  KDR_RS07050 purM 1401353..1402417 (-) 1065 WP_010888033.1 phosphoribosylformylglycinamidine cyclo-ligase -
  KDR_RS07055 crtE 1402482..1403471 (+) 990 WP_010888034.1 geranylgeranyl diphosphate synthase CrtE -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21651.22 Da        Isoelectric Point: 10.9813

>NTDB_id=972870 KDR_RS07025 WP_027480036.1 1398041..1398661(+) (comF) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
MIDLLRVLLPRACPGCGAQLGRAAGLCDRCRAELRPRVERHSPLSAQATPHLVTLGRYQGVPRRAVRALKYGGARDVAGP
LGRALAAGVPASWQIAAVVPVPLHPSRQRERGYNQAELLAQAMAAELGVPCLPLLTRTRATAQQAKLHASERSSNLAGAF
AVRGAVPPGTLLILDDVLTTGSTLLACRDALHAAGVTDLKYAAVAR

Nucleotide


Download         Length: 621 bp        

>NTDB_id=972870 KDR_RS07025 WP_027480036.1 1398041..1398661(+) (comF) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
ATGATCGACCTGCTGCGAGTGCTGCTGCCCCGCGCCTGCCCCGGCTGCGGCGCCCAGCTGGGCCGCGCCGCCGGGCTGTG
TGACCGCTGCCGCGCGGAGCTTCGACCCCGGGTGGAGCGGCACTCGCCCCTCTCGGCGCAGGCCACGCCGCATCTGGTCA
CGCTGGGGCGGTACCAGGGCGTCCCCCGCCGGGCGGTACGGGCGCTGAAATACGGCGGGGCGCGGGACGTGGCCGGGCCG
CTGGGGCGGGCGCTCGCAGCGGGGGTTCCGGCGAGCTGGCAAATAGCCGCTGTGGTGCCGGTGCCGCTGCATCCTTCGCG
CCAGCGTGAGCGCGGGTACAACCAGGCCGAGTTGCTGGCGCAGGCGATGGCCGCTGAGCTGGGGGTGCCTTGCCTGCCGC
TCCTCACCCGCACCCGCGCCACCGCTCAGCAGGCCAAGTTGCACGCCAGCGAGCGCAGCAGCAATCTGGCGGGGGCTTTC
GCGGTGCGCGGCGCCGTGCCGCCAGGCACCCTCCTCATTCTGGACGATGTGCTGACGACCGGCAGCACGCTCCTGGCCTG
CCGGGACGCCCTGCACGCGGCGGGCGTGACCGACCTGAAATACGCGGCGGTAGCGCGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(4-38)

Phosphoribosyl transferase domain (Pribosyltran)

(116-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1

Multiple sequence alignment