Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   WN777_RS21835 Genome accession   NZ_CP150839
Coordinates   4236461..4238797 (-) Length   778 a.a.
NCBI ID   WP_087954231.1    Uniprot ID   -
Organism   Bacillus pacificus strain SG15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4231461..4243797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN777_RS21810 (WN777_21795) - 4234123..4234467 (+) 345 WP_139866562.1 PH domain-containing protein -
  WN777_RS21815 (WN777_21800) - 4234506..4235573 (-) 1068 WP_139866560.1 AI-2E family transporter -
  WN777_RS21820 (WN777_21805) - 4235749..4235961 (+) 213 WP_000242550.1 hypothetical protein -
  WN777_RS21825 (WN777_21810) - 4235998..4236126 (-) 129 WP_001053553.1 YrzQ family protein -
  WN777_RS21830 (WN777_21815) - 4236145..4236333 (-) 189 WP_000469281.1 hypothetical protein -
  WN777_RS21835 (WN777_21820) recD2 4236461..4238797 (-) 2337 WP_087954231.1 ATP-dependent RecD-like DNA helicase Machinery gene
  WN777_RS21840 (WN777_21825) - 4238895..4239554 (-) 660 WP_139866558.1 tetratricopeptide repeat protein -
  WN777_RS21845 (WN777_21830) mnmA 4239665..4240780 (-) 1116 WP_001038006.1 tRNA 2-thiouridine(34) synthase MnmA -
  WN777_RS21850 (WN777_21835) - 4240797..4241942 (-) 1146 WP_139866556.1 cysteine desulfurase family protein -
  WN777_RS21855 (WN777_21840) cymR 4241978..4242394 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87434.92 Da        Isoelectric Point: 5.2015

>NTDB_id=972844 WN777_RS21835 WP_087954231.1 4236461..4238797(-) (recD2) [Bacillus pacificus strain SG15]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVAEEDVVGCIEMMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLANRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=972844 WN777_RS21835 WP_087954231.1 4236461..4238797(-) (recD2) [Bacillus pacificus strain SG15]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCACGAAGATGAAGTGTTTACATTGACAGGTCATTTTAAAGACCATCCGAAGTATGGA
AAACAATATATGGTTGAAACATTTAAGAAAGAATTGCCACAAACAAAAGCCGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGAATAGGAAAGCGTACAGCTGAAAAAATTGTAGATCATCTCGGAGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCATTAAATGGTGTTGTTAATAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAACTTTCTATTAAAATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCGTACCAACTTATCGAAGAAGTGGACGGGATTGGTTTTGGAAGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGCGCAGGATGTTTTTACACGTTAGAGAATGTTTCA
CTGCAACTTGGTCACGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGGCTGAGGAAGACGTTGTAGGCTGTATTGAAATGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAGCGAGTGT
ATTTAGCGACGCTGTTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAAGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTAACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAGATGTATGCTTCACTTCACGGGTTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCCCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGTCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACGGATCCGGTACAAGGGAAATTGCTCATTATTGATGAAT
TCTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTTAAGTCATTGCCCACGAACATTCAAGTTATCGTTGTAGGAGAT
GAAGATCAATTGCCATCTGTAGGACCTGGACAAGTGCTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAGGCGGAAGGCTCATCAGTTATTCAACTTGCCCATGCGATAAAAAATGGAACACTCCCTCCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAAAAGGTTTGT
GAAAATGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGCCCGGCCGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAAAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ATCGAAGAGGCGATAAAGTCTTGCAACTCGTGAATCAGCCTGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATCATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAATCACAAGGCAGTGAGTTTCCGATTGTGA
TTATGCCGATAGTAAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCCGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAATCGCTTGCAGGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58

Multiple sequence alignment