Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | WN777_RS18955 | Genome accession | NZ_CP150839 |
| Coordinates | 3712601..3713380 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus pacificus strain SG15 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3685982..3732014 | 3712601..3713380 | within | 0 |
Gene organization within MGE regions
Location: 3685982..3732014
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WN777_RS18835 (WN777_18820) | - | 3686177..3686428 (-) | 252 | WP_242294615.1 | YlmC/YmxH family sporulation protein | - |
| WN777_RS18840 (WN777_18825) | - | 3686555..3687796 (-) | 1242 | WP_000592994.1 | pitrilysin family protein | - |
| WN777_RS18845 (WN777_18830) | - | 3687883..3688782 (-) | 900 | WP_242294616.1 | polysaccharide deacetylase family protein | - |
| WN777_RS18850 (WN777_18835) | pnp | 3688933..3691071 (-) | 2139 | WP_086421443.1 | polyribonucleotide nucleotidyltransferase | - |
| WN777_RS18855 (WN777_18840) | rpsO | 3691232..3691501 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| WN777_RS18860 (WN777_18845) | ribF | 3691602..3692573 (-) | 972 | WP_000766719.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WN777_RS18865 (WN777_18850) | truB | 3692617..3693540 (-) | 924 | WP_318160198.1 | tRNA pseudouridine(55) synthase TruB | - |
| WN777_RS18870 (WN777_18855) | rbfA | 3693627..3693983 (-) | 357 | WP_000776445.1 | 30S ribosome-binding factor RbfA | - |
| WN777_RS18875 (WN777_18860) | - | 3693999..3694280 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| WN777_RS18880 (WN777_18865) | infB | 3694277..3696337 (-) | 2061 | WP_000036344.1 | translation initiation factor IF-2 | - |
| WN777_RS18885 (WN777_18870) | - | 3696342..3696653 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| WN777_RS18890 (WN777_18875) | rnpM | 3696654..3696926 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| WN777_RS18895 (WN777_18880) | nusA | 3696938..3698044 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| WN777_RS18900 (WN777_18885) | rimP | 3698062..3698532 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| WN777_RS18905 (WN777_18890) | - | 3698865..3703166 (-) | 4302 | WP_139866981.1 | PolC-type DNA polymerase III | - |
| WN777_RS18910 (WN777_18895) | - | 3703291..3704991 (-) | 1701 | WP_139866979.1 | proline--tRNA ligase | - |
| WN777_RS18915 (WN777_18900) | rseP | 3705101..3706357 (-) | 1257 | WP_139866977.1 | RIP metalloprotease RseP | - |
| WN777_RS18920 (WN777_18905) | dxr | 3706374..3707516 (-) | 1143 | WP_000790363.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| WN777_RS18925 (WN777_18910) | cdsA | 3707540..3708331 (-) | 792 | WP_000813584.1 | phosphatidate cytidylyltransferase | - |
| WN777_RS18930 (WN777_18915) | uppS | 3708349..3709125 (-) | 777 | WP_139866973.1 | isoprenyl transferase | - |
| WN777_RS18935 (WN777_18920) | frr | 3709211..3709768 (-) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| WN777_RS18940 (WN777_18925) | pyrH | 3709771..3710493 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| WN777_RS18945 (WN777_18930) | tsf | 3710560..3711447 (-) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| WN777_RS18950 (WN777_18935) | rpsB | 3711551..3712252 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| WN777_RS18955 (WN777_18940) | codY | 3712601..3713380 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| WN777_RS18960 (WN777_18945) | hslU | 3713458..3714849 (-) | 1392 | WP_139866971.1 | ATP-dependent protease ATPase subunit HslU | - |
| WN777_RS18965 (WN777_18950) | hslV | 3714872..3715414 (-) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| WN777_RS18970 (WN777_18955) | xerC | 3715457..3716356 (-) | 900 | WP_139866969.1 | tyrosine recombinase XerC | - |
| WN777_RS18975 (WN777_18960) | trmFO | 3716422..3717726 (-) | 1305 | WP_046198542.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| WN777_RS18980 (WN777_18965) | topA | 3717777..3719855 (-) | 2079 | WP_046198501.1 | type I DNA topoisomerase | - |
| WN777_RS18985 (WN777_18970) | dprA | 3720000..3720869 (-) | 870 | WP_139866967.1 | DNA-processing protein DprA | - |
| WN777_RS18990 (WN777_18975) | sucD | 3720957..3721859 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| WN777_RS18995 (WN777_18980) | sucC | 3721879..3723039 (-) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| WN777_RS19000 (WN777_18985) | rnhB | 3723233..3724006 (-) | 774 | WP_087954496.1 | ribonuclease HII | - |
| WN777_RS19005 (WN777_18990) | ylqF | 3724059..3724949 (-) | 891 | WP_000236700.1 | ribosome biogenesis GTPase YlqF | - |
| WN777_RS19010 (WN777_18995) | lepB | 3724970..3725521 (-) | 552 | WP_098977589.1 | signal peptidase I | - |
| WN777_RS19015 (WN777_19000) | rplS | 3725623..3725967 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| WN777_RS19020 (WN777_19005) | trmD | 3726114..3726848 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| WN777_RS19025 (WN777_19010) | rimM | 3726848..3727363 (-) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| WN777_RS19030 (WN777_19015) | - | 3727485..3727712 (-) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| WN777_RS19035 (WN777_19020) | rpsP | 3727727..3727999 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| WN777_RS19040 (WN777_19025) | ffh | 3728100..3729449 (-) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| WN777_RS19045 (WN777_19030) | - | 3729462..3729794 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| WN777_RS19050 (WN777_19035) | ftsY | 3729928..3730917 (-) | 990 | WP_000007647.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=972836 WN777_RS18955 WP_000421288.1 3712601..3713380(-) (codY) [Bacillus pacificus strain SG15]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=972836 WN777_RS18955 WP_000421288.1 3712601..3713380(-) (codY) [Bacillus pacificus strain SG15]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCCTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTCGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCCTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTCGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |