Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ACL6EQ_RS07140 Genome accession   NZ_CP178716
Coordinates   1378396..1378845 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SY1483     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373396..1383845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS07100 (ACL6EQ_07100) ctaE 1373413..1374036 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ACL6EQ_RS07105 (ACL6EQ_07105) ctaF 1374039..1374371 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ACL6EQ_RS07110 (ACL6EQ_07110) ctaG 1374398..1375291 (+) 894 WP_046664162.1 cytochrome c oxidase assembly factor CtaG -
  ACL6EQ_RS07115 (ACL6EQ_07115) ylbA 1375323..1375685 (-) 363 WP_003232238.1 YugN family protein -
  ACL6EQ_RS07120 (ACL6EQ_07120) ylbB 1375825..1376271 (+) 447 WP_003221362.1 CBS domain-containing protein -
  ACL6EQ_RS07125 (ACL6EQ_07125) ylbC 1376355..1377395 (+) 1041 WP_024573213.1 CAP domain-containing protein -
  ACL6EQ_RS07130 (ACL6EQ_07130) ylbD 1377627..1378025 (+) 399 WP_305090462.1 YlbD family protein -
  ACL6EQ_RS07135 (ACL6EQ_07135) ylbE 1378041..1378280 (+) 240 WP_124059825.1 YlbE-like family protein -
  ACL6EQ_RS07140 (ACL6EQ_07140) ylbF 1378396..1378845 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ACL6EQ_RS07145 (ACL6EQ_07145) ylbG 1378900..1379172 (+) 273 WP_009967171.1 YlbG family protein -
  ACL6EQ_RS07150 (ACL6EQ_07150) rsmD 1379496..1380050 (+) 555 WP_124059826.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACL6EQ_RS07155 (ACL6EQ_07155) coaD 1380055..1380540 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ACL6EQ_RS07160 (ACL6EQ_07160) spoVV 1380551..1381777 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  ACL6EQ_RS07165 (ACL6EQ_07165) ylbK 1381958..1382740 (+) 783 WP_003232221.1 patatin family protein -
  ACL6EQ_RS07170 (ACL6EQ_07170) sepM 1382742..1383767 (+) 1026 WP_029317763.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=972828 ACL6EQ_RS07140 WP_003221370.1 1378396..1378845(+) (ylbF) [Bacillus subtilis strain SY1483]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=972828 ACL6EQ_RS07140 WP_003221370.1 1378396..1378845(+) (ylbF) [Bacillus subtilis strain SY1483]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment