Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WN777_RS07885 Genome accession   NZ_CP150839
Coordinates   1524871..1525473 (-) Length   200 a.a.
NCBI ID   WP_000155592.1    Uniprot ID   A0A0G8BSW4
Organism   Bacillus pacificus strain SG15     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1519871..1530473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN777_RS07865 (WN777_07855) dnaD 1520193..1520900 (+) 708 WP_000728540.1 DNA replication protein DnaD -
  WN777_RS07870 (WN777_07860) nth 1520916..1521563 (+) 648 WP_000933025.1 endonuclease III -
  WN777_RS07875 (WN777_07865) - 1521567..1522085 (+) 519 WP_098921411.1 YpoC family protein -
  WN777_RS07880 (WN777_07870) - 1522109..1524805 (-) 2697 WP_318160781.1 PBP1A family penicillin-binding protein -
  WN777_RS07885 (WN777_07875) recU 1524871..1525473 (-) 603 WP_000155592.1 Holliday junction resolvase RecU Machinery gene
  WN777_RS07890 (WN777_07880) - 1525577..1526602 (+) 1026 WP_139868039.1 DUF2515 domain-containing protein -
  WN777_RS07895 (WN777_07885) - 1526867..1527043 (-) 177 WP_002020884.1 hypothetical protein -
  WN777_RS07900 (WN777_07890) - 1527129..1527371 (+) 243 WP_001252039.1 hypothetical protein -
  WN777_RS07905 (WN777_07895) - 1527387..1527731 (+) 345 WP_098670494.1 YppE family protein -
  WN777_RS07910 (WN777_07900) - 1527756..1527947 (-) 192 WP_000242661.1 YppF family protein -
  WN777_RS07915 (WN777_07905) - 1528125..1528616 (+) 492 WP_139868037.1 YppG family protein -
  WN777_RS07920 (WN777_07910) - 1528772..1529191 (+) 420 WP_000546263.1 CotD family spore coat protein -
  WN777_RS07925 (WN777_07915) - 1529248..1529802 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  WN777_RS07930 (WN777_07920) gpsB 1529900..1530235 (+) 336 WP_000622429.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.61 Da        Isoelectric Point: 9.4277

>NTDB_id=972828 WN777_RS07885 WP_000155592.1 1524871..1525473(-) (recU) [Bacillus pacificus strain SG15]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=972828 WN777_RS07885 WP_000155592.1 1524871..1525473(-) (recU) [Bacillus pacificus strain SG15]
ATGACCATTCGTTACCCAAACGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACGAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAGCATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGAAGAAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8BSW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment