Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACL6EQ_RS01495 Genome accession   NZ_CP178716
Coordinates   315847..316281 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SY1483     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 310847..321281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS01465 (ACL6EQ_01465) ydaD 311493..312353 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  ACL6EQ_RS01470 (ACL6EQ_01470) lyxE 312369..312872 (+) 504 WP_021481729.1 D-lyxose ketol-isomerase -
  ACL6EQ_RS01475 (ACL6EQ_01475) ydaF 312958..313509 (+) 552 WP_003234398.1 GNAT family N-acetyltransferase -
  ACL6EQ_RS01480 (ACL6EQ_01480) ydaG 313587..314009 (+) 423 WP_014475844.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACL6EQ_RS01485 (ACL6EQ_01485) amj 314517..315326 (+) 810 WP_003234394.1 lipid II flippase Amj -
  ACL6EQ_RS01490 (ACL6EQ_01490) ydzA 315371..315661 (-) 291 WP_014475846.1 DUF3817 domain-containing protein -
  ACL6EQ_RS01495 (ACL6EQ_01495) lrpC 315847..316281 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ACL6EQ_RS01500 (ACL6EQ_01500) topB 316346..318529 (+) 2184 WP_413359877.1 DNA topoisomerase III -
  ACL6EQ_RS01505 (ACL6EQ_01505) ephJ 318731..319819 (+) 1089 WP_029317314.1 hypothetical protein -
  ACL6EQ_RS01510 (ACL6EQ_01510) epsK 319800..320651 (+) 852 WP_413359881.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=972789 ACL6EQ_RS01495 WP_003246585.1 315847..316281(+) (lrpC) [Bacillus subtilis strain SY1483]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=972789 ACL6EQ_RS01495 WP_003246585.1 315847..316281(+) (lrpC) [Bacillus subtilis strain SY1483]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAATGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment