Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WNC56_RS08190 Genome accession   NZ_CP150833
Coordinates   1622816..1623595 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain DMB13     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1617816..1628595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WNC56_RS08170 (WNC56_08160) trmFO 1618520..1619824 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WNC56_RS08175 (WNC56_08165) xerC 1619887..1620804 (+) 918 WP_087978882.1 tyrosine recombinase XerC -
  WNC56_RS08180 (WNC56_08170) hslV 1620819..1621364 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  WNC56_RS08185 (WNC56_08175) hslU 1621381..1622781 (+) 1401 WP_213404799.1 HslU--HslV peptidase ATPase subunit -
  WNC56_RS08190 (WNC56_08180) codY 1622816..1623595 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WNC56_RS08195 (WNC56_08185) flgB 1623884..1624273 (+) 390 WP_406846159.1 flagellar basal body rod protein FlgB -
  WNC56_RS08200 (WNC56_08190) flgC 1624273..1624725 (+) 453 WP_406846160.1 flagellar basal body rod protein FlgC -
  WNC56_RS08205 (WNC56_08195) fliE 1624737..1625054 (+) 318 WP_024424178.1 flagellar hook-basal body complex protein FliE -
  WNC56_RS08210 (WNC56_08200) fliF 1625104..1626696 (+) 1593 WP_073205172.1 flagellar basal-body MS-ring/collar protein FliF -
  WNC56_RS08215 (WNC56_08205) fliG 1626708..1627724 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  WNC56_RS08220 (WNC56_08210) fliH 1627717..1628481 (+) 765 WP_044330644.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=972776 WNC56_RS08190 WP_007499612.1 1622816..1623595(+) (codY) [Bacillus safensis strain DMB13]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=972776 WNC56_RS08190 WP_007499612.1 1622816..1623595(+) (codY) [Bacillus safensis strain DMB13]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGACATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGTGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCCTACAGTGAGCTTGAAGCGAT
AGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTGATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment