Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AABD45_RS12405 Genome accession   NZ_CP150831
Coordinates   2681742..2682452 (+) Length   236 a.a.
NCBI ID   WP_170937808.1    Uniprot ID   A0AAW4HB64
Organism   Vibrio vulnificus strain Per1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2676742..2687452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD45_RS12385 (AABD45_12925) greB 2677020..2677502 (-) 483 WP_011078926.1 transcription elongation factor GreB -
  AABD45_RS12390 (AABD45_12930) - 2677738..2680062 (+) 2325 WP_225490969.1 Tex family protein -
  AABD45_RS12395 (AABD45_12935) - 2680278..2680748 (-) 471 WP_011078928.1 hypothetical protein -
  AABD45_RS12400 (AABD45_12940) bioH 2680886..2681653 (-) 768 WP_045609416.1 pimeloyl-ACP methyl ester esterase BioH -
  AABD45_RS12405 (AABD45_12945) comF 2681742..2682452 (+) 711 WP_170937808.1 ComF family protein Machinery gene
  AABD45_RS12410 (AABD45_12950) nfuA 2682583..2683167 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  AABD45_RS12415 (AABD45_12955) nudE 2683283..2683837 (+) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  AABD45_RS12420 (AABD45_12960) cysQ 2683852..2684679 (+) 828 WP_017420493.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AABD45_RS12425 (AABD45_12965) - 2684798..2685559 (-) 762 WP_225472087.1 type II secretion system protein N -
  AABD45_RS12430 (AABD45_12970) - 2685561..2686052 (-) 492 WP_039541394.1 type II secretion system protein M -
  AABD45_RS12435 (AABD45_12975) gspL 2686060..2687259 (-) 1200 WP_017420496.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27261.98 Da        Isoelectric Point: 9.4881

>NTDB_id=972732 AABD45_RS12405 WP_170937808.1 2681742..2682452(+) (comF) [Vibrio vulnificus strain Per1]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCQHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDHPAPLLLSVPMHWRRQWQRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGCTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=972732 AABD45_RS12405 WP_170937808.1 2681742..2682452(+) (comF) [Vibrio vulnificus strain Per1]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCACCACCCGCTCTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCACGTTGTCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAATGCGGCCAATGCCTGAAATCTCCGCCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTAGCTCCTTTGCT
CATCCAACGCATTGACCACCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCAGCGAGGCTTCA
ACCAAAGCGATGTGTTGGCCGCGCAACTGGCCCGTAGATTAAATCGCCCATTCCTTGCTCACGCTTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAATTTAGCTGGTGCTTTTCGCCTCAATCGCTCAGC
GCTGCCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCTGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.25

100

0.47

Multiple sequence alignment