Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACL001_RS03540 Genome accession   NZ_CP178418
Coordinates   733310..733672 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain L4796hy     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 728310..738672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL001_RS03515 (ACL001_03515) - 728826..729916 (+) 1091 WP_085947913.1 IS4-like element ISAba1 family transposase -
  ACL001_RS03520 (ACL001_03520) - 729922..730788 (-) 867 Protein_675 efflux RND transporter permease subunit -
  ACL001_RS03525 (ACL001_03525) - 730804..731922 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  ACL001_RS03530 (ACL001_03530) - 731982..732620 (-) 639 WP_031949092.1 hypothetical protein -
  ACL001_RS03535 (ACL001_03535) pilG 732903..733286 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  ACL001_RS03540 (ACL001_03540) pilH 733310..733672 (+) 363 WP_000101096.1 response regulator Machinery gene
  ACL001_RS03545 (ACL001_03545) - 733733..734269 (+) 537 WP_254231405.1 chemotaxis protein CheW -
  ACL001_RS03550 (ACL001_03550) - 734316..736394 (+) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=972001 ACL001_RS03540 WP_000101096.1 733310..733672(+) (pilH) [Acinetobacter baumannii strain L4796hy]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=972001 ACL001_RS03540 WP_000101096.1 733310..733672(+) (pilH) [Acinetobacter baumannii strain L4796hy]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment