Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACK1X7_RS39195 Genome accession   NZ_CP178393
Coordinates   9111806..9113194 (+) Length   462 a.a.
NCBI ID   WP_383148815.1    Uniprot ID   -
Organism   Streptomyces sp. CY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9106806..9118194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1X7_RS39170 (ACK1X7_39125) - 9107653..9108519 (-) 867 WP_385145777.1 peptidylprolyl isomerase -
  ACK1X7_RS39175 (ACK1X7_39130) - 9108672..9109388 (+) 717 WP_216343847.1 MBL fold metallo-hydrolase -
  ACK1X7_RS39180 (ACK1X7_39135) hisS 9109402..9110664 (+) 1263 WP_382955263.1 histidine--tRNA ligase -
  ACK1X7_RS39185 (ACK1X7_39140) - 9110737..9110882 (-) 146 Protein_7746 ABC transporter ATP-binding protein -
  ACK1X7_RS39190 (ACK1X7_39145) - 9111085..9111741 (+) 657 WP_385145781.1 vitamin K epoxide reductase family protein -
  ACK1X7_RS39195 (ACK1X7_39150) rarA 9111806..9113194 (+) 1389 WP_383148815.1 replication-associated recombination protein A Machinery gene
  ACK1X7_RS39200 (ACK1X7_39155) - 9113274..9114176 (-) 903 WP_390793505.1 DUF2470 domain-containing protein -
  ACK1X7_RS39205 (ACK1X7_39160) rpsD 9114232..9114843 (+) 612 WP_059146792.1 30S ribosomal protein S4 -
  ACK1X7_RS39210 (ACK1X7_39165) - 9115111..9115557 (+) 447 WP_385145785.1 DUF948 domain-containing protein -
  ACK1X7_RS39215 (ACK1X7_39170) - 9115566..9115895 (+) 330 WP_093466156.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48693.13 Da        Isoelectric Point: 6.2956

>NTDB_id=971731 ACK1X7_RS39195 WP_383148815.1 9111806..9113194(+) (rarA) [Streptomyces sp. CY1]
MEPDLFTAAAEDRQEKDPASSPLAVRMRPRTLDEVVGQQHLLRPGSPLRRLVGEGGGGPAGPSSVILWGPPGIGKTTLAY
VVSQATQKRFVELSAITAGVKEVRAVIDGARRSSGAYGRDTVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLLGRALTDERGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAGAGAALDKGEAE
VTLTSLEEAVDRAAVKYDRAGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVALIGFPEAALTLSHATIALALAPKSNAATTAIGAALADVRAGLAGPVPPHLRDGHYQGAKKLGHAQGYLY
PHDLPGGIAAQQYAPDKIHGKRYYEPTRYGAEARYADVVERVRARLRGDPPPSADGPAPASS

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=971731 ACK1X7_RS39195 WP_383148815.1 9111806..9113194(+) (rarA) [Streptomyces sp. CY1]
GTGGAGCCAGACCTGTTCACCGCCGCCGCAGAGGACCGCCAGGAGAAGGATCCGGCCAGCAGCCCGCTGGCCGTGCGGAT
GCGCCCGCGCACCCTCGACGAGGTCGTGGGCCAGCAGCATCTGCTGCGCCCCGGATCGCCGCTGCGCCGGCTCGTGGGCG
AGGGCGGCGGCGGTCCGGCCGGGCCGTCGTCGGTGATCCTGTGGGGCCCGCCGGGTATCGGCAAGACGACGCTGGCGTAT
GTGGTCAGCCAGGCCACCCAGAAGCGCTTTGTCGAGCTGTCGGCCATCACCGCGGGGGTCAAGGAGGTCCGGGCCGTCAT
CGACGGCGCGCGCCGCTCCTCCGGGGCCTACGGGCGGGACACCGTCCTCTTCCTGGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCGCTGCTGCCCGCCGTGGAGAACCGCTGGGTGACGCTGATCGCGGCCACCACCGAGAATCCGTACTTC
TCCGTGATCTCCCCGCTGCTCTCCCGCTCGCTGCTGCTCACCCTGGAGCCGCTGACCGACGACGATCTGCGCGGGCTGCT
GGGGCGCGCGCTCACCGACGAGCGCGGGCTCGGCGGAGCGGTCACCCTCCCCGAGGACGCCGAGGCGCATCTGCTGCGCA
TAGCGGGCGGCGACGCCCGGCGGGCGCTCACCGCGCTGGAGGCGGGTGCCGGGGCGGCCCTGGACAAGGGCGAGGCCGAG
GTCACCCTCACCTCGCTTGAGGAGGCGGTCGACCGGGCCGCGGTGAAGTACGACCGCGCGGGCGACCAGCACTACGACGT
GGCCAGTGCCCTCATCAAGTCCATCCGCGGCTCGGATGTGGACGCCGCGCTGCACTATCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCGCGGTTCATCGCCCGCCGGCTGATGATCTCGGCGAGCGAGGACATCGGCCTCGCCGATCCGACCGCCCTG
CCCACCGCCGTGGCCGCGGCGCAGGCGGTCGCCCTGATCGGCTTCCCGGAGGCCGCGCTCACCCTGAGCCATGCGACGAT
CGCCCTGGCGCTCGCGCCCAAGTCGAACGCCGCGACCACGGCGATCGGCGCGGCGCTGGCGGATGTGCGGGCGGGCCTGG
CAGGGCCGGTGCCACCGCATCTGCGCGACGGCCACTACCAGGGCGCCAAGAAGCTCGGCCACGCACAGGGCTATCTCTAC
CCGCACGATCTGCCGGGCGGGATCGCGGCGCAGCAGTACGCACCGGACAAGATCCACGGCAAGCGGTACTACGAGCCCAC
GCGGTACGGCGCCGAGGCGCGGTACGCGGATGTGGTGGAGCGGGTGCGGGCGCGGCTGCGGGGCGACCCGCCGCCGTCCG
CCGACGGTCCGGCCCCGGCCTCGTCGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(200-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.651

93.074

0.416