Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACJX2R_RS40455 Genome accession   NZ_CP178360
Coordinates   9523461..9524846 (+) Length   461 a.a.
NCBI ID   WP_262700946.1    Uniprot ID   -
Organism   Streptomyces sp. Inha503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9518461..9529846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX2R_RS40435 (ACJX2R_40510) - 9519368..9520234 (-) 867 WP_413104121.1 peptidylprolyl isomerase -
  ACJX2R_RS40440 (ACJX2R_40515) - 9520387..9521103 (+) 717 WP_413104122.1 MBL fold metallo-hydrolase -
  ACJX2R_RS40445 (ACJX2R_40520) hisS 9521117..9522379 (+) 1263 WP_413104123.1 histidine--tRNA ligase -
  ACJX2R_RS40450 (ACJX2R_40525) - 9522757..9523398 (+) 642 WP_262701016.1 vitamin K epoxide reductase family protein -
  ACJX2R_RS40455 (ACJX2R_40530) rarA 9523461..9524846 (+) 1386 WP_262700946.1 replication-associated recombination protein A Machinery gene
  ACJX2R_RS40460 (ACJX2R_40535) - 9524950..9525852 (-) 903 WP_413104124.1 DUF2470 domain-containing protein -
  ACJX2R_RS40465 (ACJX2R_40540) rpsD 9525908..9526519 (+) 612 WP_046087713.1 30S ribosomal protein S4 -
  ACJX2R_RS40470 (ACJX2R_40545) - 9526826..9527272 (+) 447 WP_210947493.1 DUF948 domain-containing protein -
  ACJX2R_RS40475 (ACJX2R_40550) - 9527281..9527610 (+) 330 WP_037951636.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48667.09 Da        Isoelectric Point: 6.2956

>NTDB_id=971465 ACJX2R_RS40455 WP_262700946.1 9523461..9524846(+) (rarA) [Streptomyces sp. Inha503]
MEPDLFTAAAEDRQEKDPASSPLAVRMRPRTLDEVVGQQHLLRPGSPLRRLVGEGGGGPAGPSSVILWGPPGIGKTTLAY
VVSQATQKRFVELSAITAGVKEVRAVIDGARRSSGAYGRDTVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLLGRALTDERGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAGAGAALDKGESE
VTLTSLEEAVDRAAVKYDRAGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVALIGFPEAALTLSHATIALALAPKSNAATTAIGAALADVRAGLAGPVPPHLRDGHYQGAKKLGHAQGYLY
PHDLPGGIAAQQYAPDKIHGKRYYEPTRYGAEARYADVVERVRARLRGDPPPSADGQAPAT

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=971465 ACJX2R_RS40455 WP_262700946.1 9523461..9524846(+) (rarA) [Streptomyces sp. Inha503]
GTGGAGCCAGACCTGTTCACCGCCGCCGCAGAGGACCGCCAGGAGAAGGATCCGGCCAGCAGCCCGCTGGCCGTGCGGAT
GCGTCCGCGCACCCTCGACGAGGTCGTGGGCCAGCAGCATCTGCTGCGCCCCGGATCCCCGCTGCGGCGGCTCGTGGGCG
AGGGCGGCGGAGGTCCGGCCGGGCCGTCGTCGGTGATCCTCTGGGGCCCGCCGGGCATCGGCAAGACGACGCTGGCGTAT
GTGGTCAGCCAGGCCACCCAGAAGCGCTTCGTCGAGCTGTCGGCCATCACCGCGGGGGTCAAGGAGGTCCGGGCCGTCAT
CGACGGCGCGCGCCGCTCCTCCGGGGCGTACGGGCGGGACACCGTGCTCTTCCTGGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCGCTGCTGCCCGCCGTGGAGAACCGCTGGGTGACGCTGATCGCGGCCACCACCGAGAATCCGTACTTC
TCCGTGATCTCCCCGCTGCTCTCGCGCTCACTGCTGCTCACCCTGGAGCCGCTGACCGACGACGATCTGCGCGGGCTGCT
GGGGCGCGCACTCACCGACGAGCGCGGGCTCGGCGGGGCGGTCACCCTCCCCGAGGACGCCGAGGCGCATCTGCTGCGGA
TAGCGGGCGGCGACGCCCGGCGGGCGCTCACCGCGCTGGAGGCGGGCGCCGGGGCGGCCCTGGACAAGGGCGAGTCCGAG
GTCACGCTCACCTCGCTGGAGGAGGCGGTCGACCGGGCCGCGGTGAAGTACGACCGCGCGGGCGATCAGCACTACGACGT
GGCCAGCGCCCTCATCAAGTCCATCCGCGGCTCGGACGTGGACGCGGCGCTGCACTATCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCGCGGTTCATCGCCCGGCGGCTGATGATCTCGGCGAGCGAGGACATCGGCCTGGCCGATCCCACCGCCCTG
CCCACCGCCGTGGCAGCGGCGCAGGCGGTCGCCCTGATCGGCTTCCCGGAGGCCGCGCTCACCCTGAGCCACGCCACCAT
CGCGCTCGCGCTCGCGCCCAAGTCCAACGCCGCCACCACGGCGATCGGCGCCGCGCTGGCCGATGTGCGGGCGGGCCTGG
CCGGGCCGGTGCCGCCGCATCTGCGCGACGGCCACTACCAGGGCGCCAAGAAGCTGGGCCACGCGCAGGGCTATCTCTAT
CCGCACGATCTGCCGGGCGGCATCGCGGCGCAGCAATACGCACCGGACAAGATCCACGGCAAGCGGTACTACGAGCCCAC
GCGGTACGGGGCCGAGGCGCGGTACGCGGATGTGGTGGAGCGGGTGCGGGCGCGGCTGCGCGGCGACCCGCCGCCATCCG
CCGACGGCCAGGCCCCGGCCACCTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(200-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.651

93.275

0.416

Multiple sequence alignment