Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ACJX2R_RS20625 Genome accession   NZ_CP178360
Coordinates   5055891..5058134 (-) Length   747 a.a.
NCBI ID   WP_413101330.1    Uniprot ID   -
Organism   Streptomyces sp. Inha503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5050891..5063134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX2R_RS20610 (ACJX2R_20685) - 5051238..5051462 (+) 225 WP_413101328.1 heavy-metal-associated domain-containing protein -
  ACJX2R_RS20615 (ACJX2R_20690) - 5051550..5053859 (+) 2310 WP_413101329.1 heavy metal translocating P-type ATPase -
  ACJX2R_RS20620 (ACJX2R_20695) - 5054449..5055738 (-) 1290 WP_262699660.1 citrate synthase -
  ACJX2R_RS20625 (ACJX2R_20700) recD/recD2/recDB 5055891..5058134 (-) 2244 WP_413101330.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACJX2R_RS20630 (ACJX2R_20705) - 5058322..5059338 (+) 1017 WP_413101331.1 LacI family DNA-binding transcriptional regulator -
  ACJX2R_RS20635 (ACJX2R_20710) - 5059335..5060903 (+) 1569 WP_262699663.1 sugar ABC transporter ATP-binding protein -
  ACJX2R_RS20640 (ACJX2R_20715) - 5060893..5062842 (+) 1950 WP_413101332.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 80776.30 Da        Isoelectric Point: 6.5219

>NTDB_id=971411 ACJX2R_RS20625 WP_413101330.1 5055891..5058134(-) (recD/recD2/recDB) [Streptomyces sp. Inha503]
MLKLAVVEGVLERITYANEENGYTVARVDTGRGSGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYQTVLPA
TVQGIRRYLGSGLIKGIGPRIADRITEHFGVDTLDVIEQEPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASISVVKNEPYRLAADVWGIGFLTADKIAQSVGIPHDSPDRVKAGLQYALSQSADQGHCYLPEEQL
IADAVKLLQVDTGLVIDCLGELAAEDEGVVREPVPGPADGEPVSAVYLVPFHRAEISLAGQVLRLLRTEEDRMPAFRGVD
WDKALGWLAGRTGADLAPEQSQVVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLRDLLAP
GSPVPAVRLTRIFRQAQQSGVVTNAHRINEGVPPVTQGLSDFFLFVEDDTEEAGRLTVDVAARRIPAKFGLDPRRDVQVL
APMHRGPAGAGTLNGLLQQAITPARPDLPERRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTSLDTDEQRLTVRT
DEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRALGQAVRTVS
AGRRCTALDHRLGGDVTVERVRWVSER

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=971411 ACJX2R_RS20625 WP_413101330.1 5055891..5058134(-) (recD/recD2/recDB) [Streptomyces sp. Inha503]
ATGCTCAAACTCGCGGTGGTGGAAGGGGTCCTGGAGCGGATCACCTACGCCAATGAGGAGAACGGCTACACGGTCGCGCG
GGTCGACACCGGCCGTGGCTCCGGAGATCTGCTCACCGTCGTCGGCTCGCTGCTGGGCGCCCAGCCGGGCGAGTCGCTGC
GGATGGAGGGCCGCTGGGGTTCCCATCCGCAATATGGCAAACAGTTCACGGTCGAGAACTACCAGACCGTCCTCCCCGCC
ACCGTCCAGGGCATCCGGCGCTATCTCGGCTCCGGGCTGATCAAGGGCATCGGCCCCCGGATCGCCGACCGGATCACCGA
GCACTTCGGCGTCGACACCCTCGACGTCATCGAACAGGAGCCCAAGCGGCTGGTCGAGGTCCCCGGCCTCGGCCCCAAGC
GCACCAAGATGATCGCCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTGATGGTCTTCCTCCAGGGGGTCGGCGTC
TCCACCTCCATCGCGGTGCGGATCTACAAGAAGTACGGCGACGCCTCGATTTCGGTCGTGAAGAACGAGCCGTACCGGCT
GGCGGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCGGTCGGCATCCCCCATGACAGCCCCG
ACCGGGTGAAGGCCGGTCTCCAGTACGCGCTGTCCCAGTCCGCCGACCAGGGCCACTGCTATCTCCCCGAGGAGCAACTC
ATCGCGGACGCGGTGAAGTTGCTCCAGGTGGACACCGGCCTGGTCATCGACTGCCTGGGCGAGCTCGCGGCCGAGGACGA
GGGCGTGGTGCGCGAGCCGGTCCCGGGCCCGGCGGACGGCGAGCCGGTCTCCGCCGTCTATCTGGTGCCCTTCCACCGCG
CCGAGATCTCCCTCGCGGGCCAGGTGCTGCGGCTGCTGCGCACCGAGGAGGACCGGATGCCCGCCTTCCGGGGCGTGGAC
TGGGACAAGGCGCTGGGCTGGCTGGCCGGCCGCACCGGCGCCGACCTGGCGCCCGAGCAGAGCCAGGTGGTGCGGCTCGC
GCTGACCGAGAAAGTCGCGGTGCTCACCGGCGGGCCGGGCTGCGGCAAGTCCTTCACCGTGCGGTCCGTGGTGGAGCTGG
CCCGCGCCAAGAAGGCCAAGGTGGTGCTCGCGGCGCCCACCGGCCGGGCCGCCAAGCGGCTGTCCGAGCTGACCGGCGCC
GAGGCGTCCACCGTCCACCGCCTGCTGGAGCTCAAGCCCGGCGGGGACGCGGCGTACGACAGGGACCGCCCGCTCGACGC
GGACCTGGTGGTGGTCGACGAGGCGTCCATGCTCGATCTGCTGCTGGCCAACAAGCTGGTCAAGGCCGTCCCGCCCGGTG
CCCATCTGCTCTTCGTCGGCGATGTGGACCAGCTGCCCAGCGTGGGCGCCGGGGAGGTGCTGCGCGATCTGCTGGCCCCC
GGCAGCCCCGTCCCGGCAGTGCGGCTGACCCGGATCTTCCGCCAGGCCCAGCAGTCCGGAGTGGTCACCAACGCCCACCG
GATCAACGAGGGGGTGCCGCCGGTCACCCAGGGCCTGTCCGACTTCTTCCTCTTCGTCGAGGACGACACCGAGGAGGCAG
GGCGGCTCACCGTCGATGTCGCGGCCCGCCGCATCCCCGCGAAGTTCGGCCTCGACCCCCGCCGTGACGTGCAGGTTCTG
GCCCCGATGCACCGCGGCCCGGCGGGCGCCGGCACGCTCAACGGGCTGCTTCAGCAGGCCATCACCCCGGCCCGCCCGGA
CCTCCCGGAGCGCCGCTTCGGCGGCCGGGTCTTCCGCGTCGGCGACAAGGTGACCCAGATCCGTAACAATTATGAGAAAG
GGGCCAACGGGGTCTTCAACGGCACGGTTGGCGTCGTCACCTCACTCGACACCGATGAGCAGCGGCTGACCGTGCGGACG
GACGAGGACGAGGAGGTACCGTACGACTTCGACGAGCTGGACGAGCTGGCTCACGCCTATGCGGTGACCATCCACCGGTC
ACAGGGCAGTGAGTACCCGGCCGTCGTGATCCCGGTGACCACCGGGGCCTGGATGATGTTGCAGCGCAACCTCCTGTACA
CGGCCGTGACCCGCGCCAAGCGCCTTGTGGTGCTGGTCGGCTCGCGCCGCGCGCTGGGGCAGGCGGTGCGCACCGTCTCG
GCGGGCAGGCGCTGCACCGCGCTGGATCACCGACTCGGCGGCGATGTGACAGTCGAGCGTGTCAGATGGGTTTCCGAACG
ATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

AAA domain (AAA_30)

(336-514)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix domain (HHH_5)

(94-143)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.463

100

0.364