Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | V8V52_RS10110 | Genome accession | NZ_CP150648 |
| Coordinates | 1937032..1937811 (+) | Length | 259 a.a. |
| NCBI ID | WP_002014541.1 | Uniprot ID | - |
| Organism | Bacillus mycoides strain 4BM1 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1899648..1962517 | 1937032..1937811 | within | 0 |
Gene organization within MGE regions
Location: 1899648..1962517
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V8V52_RS09930 (V8V52_09930) | - | 1900651..1901403 (+) | 753 | WP_002014501.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| V8V52_RS09935 (V8V52_09935) | pknB | 1901412..1903385 (+) | 1974 | WP_088034475.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| V8V52_RS09940 (V8V52_09940) | rsgA | 1903656..1904537 (+) | 882 | WP_002014503.1 | ribosome small subunit-dependent GTPase A | - |
| V8V52_RS09945 (V8V52_09945) | rpe | 1904540..1905184 (+) | 645 | WP_002014505.1 | ribulose-phosphate 3-epimerase | - |
| V8V52_RS09950 (V8V52_09950) | - | 1905285..1905965 (+) | 681 | WP_002014506.1 | thiamine diphosphokinase | - |
| V8V52_RS09955 (V8V52_09955) | spoVM | 1906032..1906112 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| V8V52_RS09960 (V8V52_09960) | rpmB | 1906186..1906374 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| V8V52_RS09965 (V8V52_09965) | - | 1906753..1907115 (+) | 363 | WP_002014507.1 | Asp23/Gls24 family envelope stress response protein | - |
| V8V52_RS09970 (V8V52_09970) | - | 1907138..1908814 (+) | 1677 | WP_002014508.1 | DAK2 domain-containing protein | - |
| V8V52_RS09975 (V8V52_09975) | recG | 1909239..1911287 (+) | 2049 | WP_016100712.1 | ATP-dependent DNA helicase RecG | - |
| V8V52_RS09980 (V8V52_09980) | fapR | 1911376..1911969 (+) | 594 | WP_000747354.1 | transcription factor FapR | - |
| V8V52_RS09985 (V8V52_09985) | plsX | 1911966..1912958 (+) | 993 | WP_002128828.1 | phosphate acyltransferase PlsX | - |
| V8V52_RS09990 (V8V52_09990) | fabD | 1912973..1913917 (+) | 945 | WP_088034478.1 | ACP S-malonyltransferase | - |
| V8V52_RS09995 (V8V52_09995) | fabG | 1913917..1914657 (+) | 741 | WP_002014514.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| V8V52_RS10000 (V8V52_10000) | acpP | 1914727..1914960 (+) | 234 | WP_002014515.1 | acyl carrier protein | - |
| V8V52_RS10005 (V8V52_10005) | rncS | 1915019..1915756 (+) | 738 | WP_002033792.1 | ribonuclease III | - |
| V8V52_RS10010 (V8V52_10010) | smc | 1915905..1919474 (+) | 3570 | WP_088034480.1 | chromosome segregation protein SMC | - |
| V8V52_RS10015 (V8V52_10015) | ftsY | 1919489..1920478 (+) | 990 | WP_002088200.1 | signal recognition particle-docking protein FtsY | - |
| V8V52_RS10020 (V8V52_10020) | - | 1920611..1920943 (+) | 333 | WP_002033794.1 | putative DNA-binding protein | - |
| V8V52_RS10025 (V8V52_10025) | ffh | 1920956..1922305 (+) | 1350 | WP_002014519.1 | signal recognition particle protein | - |
| V8V52_RS10030 (V8V52_10030) | rpsP | 1922406..1922678 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| V8V52_RS10035 (V8V52_10035) | - | 1922693..1922920 (+) | 228 | WP_002088196.1 | KH domain-containing protein | - |
| V8V52_RS10040 (V8V52_10040) | rimM | 1923042..1923557 (+) | 516 | WP_002014521.1 | ribosome maturation factor RimM | - |
| V8V52_RS10045 (V8V52_10045) | trmD | 1923557..1924291 (+) | 735 | WP_002014522.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| V8V52_RS10050 (V8V52_10050) | rplS | 1924438..1924782 (+) | 345 | WP_002014524.1 | 50S ribosomal protein L19 | - |
| V8V52_RS10055 (V8V52_10055) | lepB | 1924883..1925434 (+) | 552 | WP_002066791.1 | signal peptidase I | - |
| V8V52_RS10060 (V8V52_10060) | ylqF | 1925455..1926345 (+) | 891 | WP_002014526.1 | ribosome biogenesis GTPase YlqF | - |
| V8V52_RS10065 (V8V52_10065) | - | 1926401..1927174 (+) | 774 | WP_002014527.1 | ribonuclease HII | - |
| V8V52_RS10070 (V8V52_10070) | sucC | 1927368..1928528 (+) | 1161 | WP_002014529.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| V8V52_RS10075 (V8V52_10075) | sucD | 1928548..1929450 (+) | 903 | WP_002033796.1 | succinate--CoA ligase subunit alpha | - |
| V8V52_RS10080 (V8V52_10080) | dprA | 1929539..1930408 (+) | 870 | WP_088034482.1 | DNA-processing protein DprA | - |
| V8V52_RS10085 (V8V52_10085) | topA | 1930553..1932631 (+) | 2079 | WP_002088184.1 | type I DNA topoisomerase | - |
| V8V52_RS10090 (V8V52_10090) | trmFO | 1932680..1933984 (+) | 1305 | WP_002014534.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| V8V52_RS10095 (V8V52_10095) | xerC | 1934056..1934955 (+) | 900 | WP_078175468.1 | tyrosine recombinase XerC | - |
| V8V52_RS10100 (V8V52_10100) | hslV | 1934998..1935540 (+) | 543 | WP_002014538.1 | ATP-dependent protease proteolytic subunit HslV | - |
| V8V52_RS10105 (V8V52_10105) | hslU | 1935563..1936954 (+) | 1392 | WP_002014539.1 | ATP-dependent protease ATPase subunit HslU | - |
| V8V52_RS10110 (V8V52_10110) | codY | 1937032..1937811 (+) | 780 | WP_002014541.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| V8V52_RS10115 (V8V52_10115) | rpsB | 1938166..1938867 (+) | 702 | WP_002088178.1 | 30S ribosomal protein S2 | - |
| V8V52_RS10120 (V8V52_10120) | tsf | 1938971..1939858 (+) | 888 | WP_002088177.1 | translation elongation factor Ts | - |
| V8V52_RS10125 (V8V52_10125) | pyrH | 1939925..1940647 (+) | 723 | WP_002014544.1 | UMP kinase | - |
| V8V52_RS10130 (V8V52_10130) | frr | 1940651..1941208 (+) | 558 | WP_000531506.1 | ribosome recycling factor | - |
| V8V52_RS10135 (V8V52_10135) | - | 1941294..1942070 (+) | 777 | WP_002014545.1 | isoprenyl transferase | - |
| V8V52_RS10140 (V8V52_10140) | cdsA | 1942088..1942879 (+) | 792 | WP_002088171.1 | phosphatidate cytidylyltransferase | - |
| V8V52_RS10145 (V8V52_10145) | dxr | 1942903..1944045 (+) | 1143 | WP_002014547.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| V8V52_RS10150 (V8V52_10150) | rseP | 1944063..1945319 (+) | 1257 | WP_002088169.1 | RIP metalloprotease RseP | - |
| V8V52_RS10155 (V8V52_10155) | - | 1945429..1947129 (+) | 1701 | WP_078175371.1 | proline--tRNA ligase | - |
| V8V52_RS10160 (V8V52_10160) | - | 1947254..1951555 (+) | 4302 | WP_088034484.1 | PolC-type DNA polymerase III | - |
| V8V52_RS10165 (V8V52_10165) | rimP | 1951889..1952359 (+) | 471 | WP_002146103.1 | ribosome maturation factor RimP | - |
| V8V52_RS10170 (V8V52_10170) | nusA | 1952377..1953483 (+) | 1107 | WP_002014554.1 | transcription termination factor NusA | - |
| V8V52_RS10175 (V8V52_10175) | - | 1953495..1953767 (+) | 273 | WP_002088161.1 | YlxR family protein | - |
| V8V52_RS10180 (V8V52_10180) | - | 1953768..1954079 (+) | 312 | WP_002111365.1 | YlxQ family RNA-binding protein | - |
| V8V52_RS10185 (V8V52_10185) | infB | 1954084..1956150 (+) | 2067 | WP_002014558.1 | translation initiation factor IF-2 | - |
| V8V52_RS10190 (V8V52_10190) | - | 1956147..1956428 (+) | 282 | WP_002088157.1 | DUF503 family protein | - |
| V8V52_RS10195 (V8V52_10195) | rbfA | 1956444..1956800 (+) | 357 | WP_000776437.1 | 30S ribosome-binding factor RbfA | - |
| V8V52_RS10200 (V8V52_10200) | truB | 1956891..1957814 (+) | 924 | WP_002033681.1 | tRNA pseudouridine(55) synthase TruB | - |
| V8V52_RS10205 (V8V52_10205) | ribF | 1957858..1958829 (+) | 972 | WP_002128800.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| V8V52_RS10210 (V8V52_10210) | rpsO | 1958930..1959199 (+) | 270 | WP_088034492.1 | 30S ribosomal protein S15 | - |
| V8V52_RS10215 (V8V52_10215) | pnp | 1959361..1961514 (+) | 2154 | WP_002033682.1 | polyribonucleotide nucleotidyltransferase | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.99 Da Isoelectric Point: 4.7251
>NTDB_id=970926 V8V52_RS10110 WP_002014541.1 1937032..1937811(+) (codY) [Bacillus mycoides strain 4BM1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=970926 V8V52_RS10110 WP_002014541.1 1937032..1937811(+) (codY) [Bacillus mycoides strain 4BM1]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.275 |
98.456 |
0.456 |