Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   WMC50_RS09885 Genome accession   NZ_CP150635
Coordinates   2267465..2269336 (+) Length   623 a.a.
NCBI ID   WP_116464024.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. longum strain TCI068     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2265832..2280994 2267465..2269336 within 0


Gene organization within MGE regions


Location: 2265832..2280994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMC50_RS09875 (WMC50_09875) - 2265832..2266395 (-) 564 WP_116464028.1 BRO family protein -
  WMC50_RS09880 (WMC50_09880) - 2266757..2267278 (+) 522 WP_116464026.1 MarR family transcriptional regulator -
  WMC50_RS09885 (WMC50_09885) rcrP 2267465..2269336 (+) 1872 WP_116464024.1 ABC transporter ATP-binding protein Regulator
  WMC50_RS09890 (WMC50_09890) rcrQ 2269551..2271380 (+) 1830 WP_032684157.1 ABC transporter ATP-binding protein Regulator
  WMC50_RS09895 (WMC50_09895) - 2271519..2272565 (-) 1047 WP_007052939.1 FAD:protein FMN transferase -
  WMC50_RS09900 (WMC50_09900) - 2272647..2274065 (+) 1419 WP_011068650.1 MFS transporter -
  WMC50_RS09910 (WMC50_09910) rsmI 2274645..2275655 (+) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  WMC50_RS09915 (WMC50_09915) - 2275682..2276059 (-) 378 WP_007052935.1 hypothetical protein -
  WMC50_RS09920 (WMC50_09920) - 2276050..2276697 (-) 648 WP_007052934.1 hypothetical protein -
  WMC50_RS09925 (WMC50_09925) metG 2277014..2278879 (+) 1866 WP_007054114.1 methionine--tRNA ligase -
  WMC50_RS09930 (WMC50_09930) - 2279918..2280994 (-) 1077 WP_116464022.1 hypothetical protein -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68030.55 Da        Isoelectric Point: 5.1942

>NTDB_id=970760 WMC50_RS09885 WP_116464024.1 2267465..2269336(+) (rcrP) [Bifidobacterium longum subsp. longum strain TCI068]
MLRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSHMKDIWIAGGKMLLISLGSVACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITVMMAMVMPKFKVMQTLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGEAAEGADIPA
EQLNRVRAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCEVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=970760 WMC50_RS09885 WP_116464024.1 2267465..2269336(+) (rcrP) [Bifidobacterium longum subsp. longum strain TCI068]
ATGCTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAAACGCCGGGCAGCCACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGTGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGTTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGCCTGC
AGCTCATCGTCAAATCGCCGATCATGGCCGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCGTCATGATGGCCATGGTCATGCCGAAGTTCAAGGTCATGCA
GACCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGAGACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGTTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCTTACCTCATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTGCTCGACACTGAG
CCAATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGCCAGAGGGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCGAGGCCGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAGGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGTCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGAGGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(60-292)

ABC transporter (ABC_tran)

(359-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.341

100

0.491

Multiple sequence alignment