Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   WN947_RS25885 Genome accession   NZ_CP150491
Coordinates   5351407..5353668 (+) Length   753 a.a.
NCBI ID   WP_024984957.1    Uniprot ID   -
Organism   Brevibacillus borstelensis strain S8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5346407..5358668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN947_RS25855 - 5346700..5347455 (+) 756 WP_003387554.1 tRNA threonylcarbamoyladenosine dehydratase -
  WN947_RS25860 - 5347462..5348799 (+) 1338 WP_024983959.1 AAA family ATPase -
  WN947_RS25865 - 5348841..5349014 (-) 174 WP_170208318.1 hypothetical protein -
  WN947_RS25870 - 5349122..5349541 (+) 420 WP_003387550.1 Rrf2 family transcriptional regulator -
  WN947_RS25875 - 5349554..5350696 (+) 1143 WP_340701231.1 cysteine desulfurase family protein -
  WN947_RS25880 - 5350808..5350978 (-) 171 WP_340701232.1 hypothetical protein -
  WN947_RS25885 recD2 5351407..5353668 (+) 2262 WP_024984957.1 ATP-dependent RecD-like DNA helicase Machinery gene
  WN947_RS25890 - 5353747..5354229 (+) 483 WP_003387546.1 PRC-barrel domain-containing protein -
  WN947_RS25895 - 5354266..5354472 (+) 207 WP_003387545.1 hypothetical protein -
  WN947_RS25900 - 5354500..5354685 (+) 186 WP_003387544.1 hypothetical protein -
  WN947_RS25905 - 5354967..5355824 (+) 858 WP_243015000.1 MurR/RpiR family transcriptional regulator -
  WN947_RS25910 - 5355908..5356594 (-) 687 WP_340701233.1 TerC family protein -
  WN947_RS25915 - 5356988..5358052 (+) 1065 WP_003387540.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 85038.20 Da        Isoelectric Point: 5.1617

>NTDB_id=970674 WN947_RS25885 WP_024984957.1 5351407..5353668(+) (recD2) [Brevibacillus borstelensis strain S8]
MMSQETLPLFAEPFVRGYVEQEIFYNEETWYGVIRLKVEETSEAIKENDVVVVGNFPRPHPEELYTFYGEWKTHPRFGQQ
FAASRYERETPKTVAGVEKYLASGLFQGIGKKMAKRIVEHLGVDALSIIADRPESLAEVPGISEARAKQIYESVMEHRSL
EQAMVFLYEFGIGVQLALRIYQTYKLETLKVLSEEPYRLIEDVQGIGFKRADEIARSTGIAASSEERVQAAAIFTLQEAS
YAEGHVFLPIEELCEKTLRLLHECGGHAFTPEEVRLAIEALFVASKVMWDEERVYLPSLFFAEVGLAKRLRFFADRDDFA
SFPVSELYQAMGAVEEELDITYAQTQRDAIEQAITSGLMLLTGGPGTGKTTVIRGICRVFAHLHGISFDLKKYDESNPFP
ILLAAPTGRAAKRMAETTGLPAMTLHRLLGWKGDSFEHDAEHQIRGKLLIVDEMSMVDIWLANQLFRALPSDMQIIMVGD
PDQLPSVGPGNVLQDMIRSGLLPRVQLTEIYRQAEESSIIRLAHDVRKGIVPSDLLDSSPDRRFFTSSPQDVNEAVKQIC
SGAVKKGYTAKDVQVLAPMYKGNAGVNRLNEELQELFNPKTGQKREVTFGDTVFRTGDKVLQLVNNAEEHVFNGDMGEIV
AIFYPNENAENEEMIVVSFDGREVMYKRSAYHQLTLAYCCSVHKSQGSEFPIVVMPFVKNYHRMLRRKLVYTGITRSKSF
LIMCGEPEAFRIAVQTDEEGVRYSYLEERLKQG

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=970674 WN947_RS25885 WP_024984957.1 5351407..5353668(+) (recD2) [Brevibacillus borstelensis strain S8]
ATGATGTCGCAGGAAACACTCCCTTTGTTTGCTGAACCATTCGTTCGCGGCTATGTGGAACAAGAAATTTTTTACAATGA
AGAAACGTGGTATGGAGTTATTCGTCTTAAAGTAGAGGAGACCTCGGAAGCGATCAAGGAGAATGACGTCGTTGTCGTGG
GAAACTTCCCCCGTCCTCATCCGGAAGAGCTGTACACATTTTACGGAGAATGGAAAACACACCCCCGGTTTGGGCAGCAA
TTCGCGGCTTCCCGTTATGAGCGCGAAACGCCGAAAACGGTGGCTGGCGTAGAAAAGTATCTGGCCAGTGGCCTGTTCCA
GGGAATTGGCAAAAAGATGGCCAAACGAATCGTAGAGCATCTGGGAGTCGACGCGTTGTCGATTATCGCTGACCGTCCCG
AGTCGTTGGCGGAGGTGCCTGGGATATCGGAAGCACGTGCCAAGCAGATTTATGAATCGGTGATGGAACATCGTTCTTTG
GAACAGGCTATGGTGTTTTTGTACGAGTTCGGGATCGGAGTGCAGCTCGCATTGCGCATCTACCAGACATACAAGCTGGA
GACCTTGAAGGTGCTTTCGGAGGAGCCGTACCGGCTGATCGAGGATGTGCAGGGGATCGGTTTCAAACGTGCGGACGAGA
TCGCTCGTTCAACCGGGATCGCGGCATCCTCGGAGGAGCGGGTCCAGGCAGCAGCTATTTTTACGCTGCAGGAAGCTTCT
TATGCCGAAGGCCACGTTTTTCTCCCGATCGAAGAGCTGTGTGAAAAAACGCTGCGCTTGCTTCATGAGTGCGGCGGACA
TGCCTTTACGCCGGAAGAGGTCAGACTGGCGATTGAAGCGCTGTTTGTCGCCTCCAAAGTGATGTGGGACGAGGAGCGGG
TTTACTTGCCAAGCCTCTTTTTTGCCGAGGTCGGCTTGGCCAAGCGGCTTCGTTTTTTTGCCGACCGCGATGACTTTGCT
TCCTTTCCGGTGTCTGAGCTGTACCAGGCCATGGGTGCAGTCGAAGAAGAGCTGGATATTACGTATGCACAGACGCAGCG
GGATGCGATCGAACAGGCGATCACTTCTGGCTTGATGCTGCTGACAGGTGGGCCGGGTACAGGGAAGACTACTGTCATCC
GGGGGATATGTCGTGTATTTGCACATCTGCATGGAATTTCCTTCGATCTGAAAAAATATGACGAAAGCAATCCTTTTCCC
ATCCTGCTGGCCGCGCCTACGGGCAGAGCGGCAAAGAGAATGGCGGAGACGACCGGGCTGCCCGCCATGACGCTTCACCG
GCTGCTTGGCTGGAAAGGCGACAGCTTTGAACATGATGCCGAACACCAGATCCGTGGAAAGCTGTTGATCGTAGATGAGA
TGTCGATGGTGGACATTTGGCTTGCGAATCAATTGTTCAGAGCGCTGCCAAGCGACATGCAAATCATCATGGTTGGCGAT
CCGGACCAGCTTCCGTCTGTCGGCCCGGGGAACGTTTTGCAGGACATGATTCGTTCCGGGCTATTGCCGCGCGTACAGCT
TACGGAGATTTATCGGCAAGCGGAAGAATCGTCGATTATTCGCCTCGCCCATGATGTGCGGAAAGGAATTGTCCCGTCCG
ATCTGCTGGATTCCTCCCCTGATCGCAGATTTTTCACAAGTTCGCCACAAGATGTAAACGAAGCTGTGAAACAAATTTGC
TCGGGAGCCGTAAAGAAAGGATATACAGCAAAAGATGTACAAGTCCTCGCGCCCATGTACAAAGGAAATGCGGGTGTAAA
CCGGTTGAATGAAGAGCTCCAGGAGCTGTTTAATCCAAAGACCGGCCAAAAACGGGAAGTGACGTTTGGCGACACCGTAT
TTCGGACGGGGGACAAAGTGCTTCAACTTGTAAACAACGCCGAAGAACACGTGTTCAACGGTGATATGGGTGAGATTGTC
GCCATTTTTTACCCAAATGAAAACGCAGAGAATGAAGAAATGATCGTCGTCTCCTTTGATGGCCGTGAAGTGATGTACAA
GCGGTCTGCATACCATCAGCTGACGCTGGCCTACTGCTGCTCCGTTCATAAGTCGCAAGGCAGCGAGTTTCCAATCGTCG
TCATGCCATTTGTAAAAAATTACCACAGGATGCTGCGACGGAAGCTGGTGTATACAGGAATAACGCGCAGTAAATCATTT
CTCATCATGTGTGGAGAGCCGGAAGCGTTTCGTATCGCCGTCCAGACAGACGAAGAGGGCGTACGATACAGCTACCTGGA
GGAACGCCTGAAACAAGGATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix domain (HHH_5)

(107-153)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(342-536)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-723)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.267

99.602

0.501

Multiple sequence alignment