Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SOZ35_RS08740 Genome accession   NZ_CP150480
Coordinates   1710892..1711671 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1705892..1716671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS08720 (SOZ35_08720) trmFO 1706587..1707894 (+) 1308 WP_063637671.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SOZ35_RS08725 (SOZ35_08725) xerC 1707961..1708875 (+) 915 WP_010788602.1 tyrosine recombinase XerC -
  SOZ35_RS08730 (SOZ35_08730) clpQ 1708889..1709434 (+) 546 WP_003328953.1 ATP-dependent protease subunit ClpQ -
  SOZ35_RS08735 (SOZ35_08735) hslU 1709442..1710854 (+) 1413 WP_255265367.1 HslU--HslV peptidase ATPase subunit -
  SOZ35_RS08740 (SOZ35_08740) codY 1710892..1711671 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SOZ35_RS08745 (SOZ35_08745) flgB 1712091..1712480 (+) 390 WP_340640593.1 flagellar basal body rod protein FlgB -
  SOZ35_RS08750 (SOZ35_08750) flgC 1712480..1712929 (+) 450 WP_106034117.1 flagellar basal body rod protein FlgC -
  SOZ35_RS08755 (SOZ35_08755) fliE 1712940..1713260 (+) 321 WP_003328948.1 flagellar hook-basal body complex protein FliE -
  SOZ35_RS08760 (SOZ35_08760) fliF 1713304..1714911 (+) 1608 WP_106034116.1 flagellar basal-body MS-ring/collar protein FliF -
  SOZ35_RS08765 (SOZ35_08765) fliG 1714924..1715940 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=970480 SOZ35_RS08740 WP_003328951.1 1710892..1711671(+) (codY) [Bacillus atrophaeus strain TL401]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=970480 SOZ35_RS08740 WP_003328951.1 1710892..1711671(+) (codY) [Bacillus atrophaeus strain TL401]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTAAGCCGCAGAGGAAAGCTGTTAGGTTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCGGTCGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCAATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTGATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCAATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCGCTCAGAAAGCTGGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAACAACAAGTTCTTGATCGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment