Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SOZ35_RS08710 Genome accession   NZ_CP150480
Coordinates   1703348..1704247 (+) Length   299 a.a.
NCBI ID   WP_088117150.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1698348..1709247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS08690 (SOZ35_08690) - 1698998..1700746 (+) 1749 WP_340640592.1 hypothetical protein -
  SOZ35_RS08695 (SOZ35_08695) - 1700743..1701024 (+) 282 WP_219947607.1 FlhB-like flagellar biosynthesis protein -
  SOZ35_RS08700 (SOZ35_08700) sucC 1701198..1702355 (+) 1158 WP_010788598.1 ADP-forming succinate--CoA ligase subunit beta -
  SOZ35_RS08705 (SOZ35_08705) sucD 1702384..1703286 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  SOZ35_RS08710 (SOZ35_08710) dprA 1703348..1704247 (+) 900 WP_088117150.1 DNA-processing protein DprA Machinery gene
  SOZ35_RS08715 (SOZ35_08715) topA 1704436..1706511 (+) 2076 WP_010788600.1 type I DNA topoisomerase -
  SOZ35_RS08720 (SOZ35_08720) trmFO 1706587..1707894 (+) 1308 WP_063637671.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SOZ35_RS08725 (SOZ35_08725) xerC 1707961..1708875 (+) 915 WP_010788602.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33203.26 Da        Isoelectric Point: 9.5634

>NTDB_id=970479 SOZ35_RS08710 WP_088117150.1 1703348..1704247(+) (dprA) [Bacillus atrophaeus strain TL401]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTDPHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPTWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRAKGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPETKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=970479 SOZ35_RS08710 WP_088117150.1 1703348..1704247(+) (dprA) [Bacillus atrophaeus strain TL401]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGATCCGCACCCAATACACACCATCACTTCCGGTAAAATAAAAGCCGCTGCGC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATATCCGACATGGCTGAAAACGATCTATGATCCGCCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTTATAAAAGGCCGGAAAATTGGAGTGGTGGGTACGCGAAATCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTAACAAAAGAGCTTGCAGGCAATCAGTGGATCATTGTCAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAAAGGGTATACAATCGGTGTCATAGCAGGCGGTTTCCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATCTGCTGCTGTCAGAACATCCACCGGAAACAAAACCCCAAAAATGGCATTTTC
CCATGAGAAACCGTTTAATAAGCGGGTTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCTGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCCGCTGAGGATATTTACAGTGAGTTATCGGAGGGGAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

74.247

100

0.742

Multiple sequence alignment