Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VUK78_RS26620 Genome accession   NZ_CP150467
Coordinates   3481421..3482146 (+) Length   241 a.a.
NCBI ID   WP_152163865.1    Uniprot ID   -
Organism   Vibrio harveyi strain NH-LM1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3476421..3487146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUK78_RS26605 (VUK78_26605) - 3477546..3479867 (+) 2322 WP_017189965.1 Tex family protein -
  VUK78_RS26610 (VUK78_26610) - 3479971..3480435 (-) 465 WP_009698973.1 hypothetical protein -
  VUK78_RS26615 (VUK78_26615) bioH 3480572..3481336 (-) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  VUK78_RS26620 (VUK78_26620) comF 3481421..3482146 (+) 726 WP_152163865.1 ComF family protein Machinery gene
  VUK78_RS26625 (VUK78_26625) nfuA 3482244..3482828 (+) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  VUK78_RS26630 (VUK78_26630) nudE 3483004..3483570 (+) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  VUK78_RS26635 (VUK78_26635) cysQ 3483618..3484445 (+) 828 WP_274792308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VUK78_RS26640 (VUK78_26640) - 3484735..3485496 (-) 762 WP_005448490.1 type II secretion system protein N -
  VUK78_RS26645 (VUK78_26645) - 3485498..3485989 (-) 492 WP_005448492.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27651.71 Da        Isoelectric Point: 8.4332

>NTDB_id=970434 VUK78_RS26620 WP_152163865.1 3481421..3482146(+) (comF) [Vibrio harveyi strain NH-LM1]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSALTQLLAERIEQPAPVITSVPIHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=970434 VUK78_RS26620 WP_152163865.1 3481421..3482146(+) (comF) [Vibrio harveyi strain NH-LM1]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTGCGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCACCCGTCATCACCAGCGTGCCCATTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

92.116

100

0.921
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469

Multiple sequence alignment