Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MHH77_RS12220 Genome accession   NZ_CP150435
Coordinates   2401092..2403416 (-) Length   774 a.a.
NCBI ID   WP_058014560.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2837     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2396092..2408416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH77_RS12205 (MHH77_12205) dtd 2397741..2398184 (-) 444 WP_003216527.1 D-aminoacyl-tRNA deacylase -
  MHH77_RS12210 (MHH77_12210) - 2398203..2400413 (-) 2211 WP_012010732.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MHH77_RS12215 (MHH77_12215) - 2400556..2401068 (-) 513 WP_003216770.1 adenine phosphoribosyltransferase -
  MHH77_RS12220 (MHH77_12220) recJ 2401092..2403416 (-) 2325 WP_058014560.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MHH77_RS12225 (MHH77_12225) - 2403498..2403851 (-) 354 WP_058014559.1 lipopolysaccharide assembly LapA domain-containing protein -
  MHH77_RS12230 (MHH77_12230) - 2403953..2404441 (-) 489 WP_058014558.1 cation:proton antiporter regulatory subunit -
  MHH77_RS12235 (MHH77_12235) secDF 2404628..2406856 (-) 2229 WP_058014557.1 protein translocase subunit SecDF -
  MHH77_RS12240 (MHH77_12240) - 2406898..2407194 (-) 297 WP_003216788.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 87277.94 Da        Isoelectric Point: 4.8661

>NTDB_id=970305 MHH77_RS12220 WP_058014560.1 2401092..2403416(-) (recJ) [Bacillus sp. FSL K6-2837]
MLLSKMRWEYEHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFHDPFLLKGMKEAVERINKAIEQQ
ESIVIFGDYDADGVTSTSVLLHTLKELSAKVDFYIPDRFKEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEI
GLDLIITDHHEPSEELPEALAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLPAQLLDLAAIGTIADLVPLHDENRWL
AKKGLMQLRQSNRPGLKALLKEAGATLEEANEETVGFQIAPRLNAVGRIEQADPAVHLLMTEEKDEAEELARFVQELNKE
RQKIVSTITEEAIQMVEETGDDQSAIVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFH
LSKCRDILPHFGGHPMAAGMTLRADDVPLLRERLNQYANETLTEEDFIPIQRVDAVCKVDELTVEAIEEVGMLSPFGMQN
PKPFIMIEDARLEEIRTIGANQNHIKMSLKDEDKLLDCVGFHQGQLKEEIVTGSRISVIGEMSINEWNNRKKPQLMLKDA
RVDEWQLFDLRGKKDWEKTISTLDPEKYVVVCFDEETKEEVSIPIHHVHAENVSTLDVEGKYVVFADVPADEQLLRQLLE
NQKPARVYTVFQRKEDHFMSSFPSRDQFKWFYGFLLKRGSFPLKEQGMELAKHRGWTKDTMIFMTKVFFELGFVKIENGV
LSIVRDAPKKDLTASASYTAKQRLMELDQTLTYSSAKELKEWLNSMMSEVSPVL

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=970305 MHH77_RS12220 WP_058014560.1 2401092..2403416(-) (recJ) [Bacillus sp. FSL K6-2837]
ATGTTATTATCCAAAATGCGCTGGGAATATGAACATCCAAGCGAAGAAAAAGTGAAATCACTCTCTGAAAATCTGAATAT
TTCAGCGCTGACTGCATCGCTTCTTGTAAAAAGAGGACTCGAAGAAGTAGAAGAAGCGAGGTCTTTTTTATTTGATCAAA
AAGCCGAATTTCATGATCCATTTCTATTAAAAGGAATGAAAGAAGCAGTAGAGCGCATCAACAAAGCAATCGAACAGCAG
GAATCGATTGTGATCTTCGGAGACTATGATGCGGATGGTGTGACAAGTACGTCTGTGCTTTTACATACATTAAAAGAGTT
GTCTGCGAAAGTAGACTTTTATATTCCAGATCGATTTAAAGAAGGCTACGGGCCTAATGAACAGGCTTTTCGATATATCA
AAGAGCAAGGCGCATCGCTTGTCATCACCGTCGATACAGGCATTGCAGCTGTAAATGAAGCGCGTATTGCAAAAGAAATA
GGGTTAGACTTGATCATTACAGATCACCATGAACCAAGCGAAGAGCTGCCTGAAGCACTTGCGATTGTCCATCCTAAGCA
GCCAGGCTGTGAGTATCCCTTTAAAGAACTTGCCGGTGTAGGCGTAGCATTTAAAGTGGCTCATGCTCTTCTTGGTAAGC
TGCCAGCTCAGCTGCTAGATCTTGCGGCAATTGGGACAATAGCGGATCTTGTGCCGCTTCATGATGAGAATAGATGGCTC
GCTAAAAAAGGGCTTATGCAGCTTCGGCAGTCGAATAGACCGGGACTGAAGGCGTTATTGAAAGAAGCAGGTGCTACTCT
TGAAGAAGCAAATGAGGAAACGGTCGGCTTTCAAATTGCGCCAAGGCTGAATGCTGTAGGACGAATTGAACAGGCAGATC
CAGCTGTTCATCTTCTCATGACAGAGGAGAAGGATGAAGCAGAAGAACTCGCTCGTTTTGTACAAGAACTGAATAAAGAA
CGTCAAAAAATTGTGAGTACGATCACAGAAGAAGCCATTCAAATGGTGGAAGAGACAGGTGATGACCAGTCTGCCATTGT
TGTAGCGAAAGCTGGCTGGAATCCGGGTGTTGTTGGAATTGTTGCCTCTAAATTGACGGATACATTTTCTCGTCCGGCAA
TTGTGCTTGGAATAGATGAAGAGACGCAAATGGCAAAAGGTTCAGCACGGAGTATTCCCGGCTTCGATCTATTTTTCCAT
TTAAGCAAATGCCGCGACATTCTGCCGCATTTCGGCGGGCACCCGATGGCTGCGGGCATGACACTTCGAGCGGATGATGT
CCCTTTACTAAGGGAAAGATTAAATCAATATGCGAATGAAACGTTGACAGAGGAAGACTTTATTCCGATTCAGCGGGTCG
ATGCTGTATGCAAGGTAGACGAATTGACGGTTGAAGCGATTGAAGAAGTGGGGATGCTGTCACCATTTGGCATGCAGAAT
CCAAAGCCGTTCATCATGATTGAAGATGCGAGACTTGAAGAAATCCGAACCATTGGAGCAAATCAAAATCATATCAAAAT
GTCTCTGAAAGATGAAGACAAACTGCTTGACTGTGTCGGTTTTCATCAAGGTCAATTGAAAGAAGAAATTGTCACAGGTA
GCCGGATTTCCGTCATTGGTGAAATGTCCATCAATGAATGGAATAACCGGAAGAAACCACAGCTCATGCTAAAAGATGCC
CGAGTAGATGAATGGCAGCTGTTTGATTTGCGCGGCAAAAAGGATTGGGAAAAGACAATCTCCACGCTTGACCCCGAAAA
ATATGTGGTGGTCTGTTTTGACGAAGAAACAAAAGAGGAAGTCAGCATCCCGATTCATCATGTCCATGCAGAAAATGTTT
CAACACTCGATGTTGAAGGCAAGTATGTCGTCTTTGCAGATGTCCCTGCAGATGAACAGTTGCTAAGGCAGCTGTTAGAA
AATCAAAAGCCAGCTAGAGTGTATACAGTTTTCCAAAGAAAAGAAGATCATTTCATGTCCTCTTTCCCTAGCCGTGATCA
ATTCAAATGGTTTTATGGATTCTTGTTAAAACGAGGAAGTTTCCCTCTCAAGGAACAAGGAATGGAGCTTGCGAAACATA
GAGGCTGGACAAAAGATACAATGATTTTTATGACAAAGGTGTTTTTTGAACTCGGTTTTGTTAAAATAGAGAATGGTGTG
CTGTCAATAGTACGTGATGCCCCTAAAAAAGATTTAACGGCATCAGCATCCTATACAGCAAAACAACGATTGATGGAACT
CGATCAAACACTAACATATTCCTCAGCCAAAGAGCTGAAGGAATGGCTGAATAGCATGATGAGCGAAGTCTCACCTGTGC
TTTGA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-763)

DHHA1 domain (DHHA1)

(309-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

67.31

100

0.676

Multiple sequence alignment