Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ACLF6N_RS08675 Genome accession   NZ_CP177279
Coordinates   1618317..1618766 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain KFRI-P74     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613317..1623766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6N_RS08635 (ACLF6N_08635) ctaE 1613333..1613956 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ACLF6N_RS08640 (ACLF6N_08640) ctaF 1613959..1614291 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ACLF6N_RS08645 (ACLF6N_08645) ctaG 1614319..1615212 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  ACLF6N_RS08650 (ACLF6N_08650) ylbA 1615244..1615606 (-) 363 WP_014479712.1 YugN family protein -
  ACLF6N_RS08655 (ACLF6N_08655) ylbB 1615746..1616192 (+) 447 WP_003221362.1 CBS domain-containing protein -
  ACLF6N_RS08660 (ACLF6N_08660) ylbC 1616276..1617316 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  ACLF6N_RS08665 (ACLF6N_08665) ylbD 1617548..1617946 (+) 399 WP_003232233.1 YlbD family protein -
  ACLF6N_RS08670 (ACLF6N_08670) ylbE 1617962..1618201 (+) 240 WP_003232231.1 YlbE-like family protein -
  ACLF6N_RS08675 (ACLF6N_08675) ylbF 1618317..1618766 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ACLF6N_RS08680 (ACLF6N_08680) ylbG 1618821..1619093 (+) 273 WP_069964462.1 YlbG family protein -
  ACLF6N_RS08685 (ACLF6N_08685) rsmD 1619416..1619970 (+) 555 WP_017694816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACLF6N_RS08690 (ACLF6N_08690) coaD 1619975..1620460 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ACLF6N_RS08695 (ACLF6N_08695) spoVV 1620471..1621697 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ACLF6N_RS08700 (ACLF6N_08700) ylbK 1621878..1622660 (+) 783 WP_003232221.1 patatin family protein -
  ACLF6N_RS08705 (ACLF6N_08705) sepM 1622662..1623687 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=970261 ACLF6N_RS08675 WP_003221370.1 1618317..1618766(+) (ylbF) [Bacillus subtilis strain KFRI-P74]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=970261 ACLF6N_RS08675 WP_003221370.1 1618317..1618766(+) (ylbF) [Bacillus subtilis strain KFRI-P74]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCTACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1