Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MHI25_RS15885 Genome accession   NZ_CP150307
Coordinates   3552636..3554396 (-) Length   586 a.a.
NCBI ID   WP_036677200.1    Uniprot ID   A0A1R0X3U5
Organism   Paenibacillus sp. FSL E2-0177     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3547636..3559396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI25_RS15870 (MHI25_15870) - 3548972..3549931 (+) 960 WP_340395684.1 ABC transporter permease subunit -
  MHI25_RS15875 (MHI25_15875) - 3549945..3550880 (+) 936 WP_081383287.1 carbohydrate ABC transporter permease -
  MHI25_RS15880 (MHI25_15880) - 3550971..3552533 (+) 1563 WP_076309449.1 ABC transporter substrate-binding protein -
  MHI25_RS15885 (MHI25_15885) rcrQ 3552636..3554396 (-) 1761 WP_036677200.1 ABC transporter ATP-binding protein Regulator
  MHI25_RS15890 (MHI25_15890) rcrP 3554396..3556147 (-) 1752 WP_076130605.1 ABC transporter ATP-binding protein Regulator
  MHI25_RS15895 (MHI25_15895) - 3556267..3557322 (-) 1056 WP_081383288.1 HAMP domain-containing sensor histidine kinase -
  MHI25_RS15900 (MHI25_15900) - 3557319..3557993 (-) 675 WP_036677195.1 response regulator transcription factor -
  MHI25_RS15905 (MHI25_15905) - 3558319..3559284 (+) 966 WP_076303711.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64511.79 Da        Isoelectric Point: 6.5784

>NTDB_id=970218 MHI25_RS15885 WP_036677200.1 3552636..3554396(-) (rcrQ) [Paenibacillus sp. FSL E2-0177]
MNKSKEQLNTWSKLLHYCRKYIPVVLIAIISAAIGTVLTLLGPDKLSEMTDLITAGLVTGIDMEAVTSIGLFLVFIYILS
AVLSLVQGLIMSAVTQKVSKNLRADLSRKMNKLPISYYNNSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFTGSII
MMFKTNVIMTITAVVATIIGFGLIAAIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNGESQMRNTFESLNMNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVVGAVLAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDADEMDNESHKERHLKTAVGKVDFEHVQFAYENSDKLVIKDFSAEIKPGQKIAIVGPTGAGKTTLINLLIRFNELK
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDKEVEDACKSVGLHHFIQTLSAGYNTILNDK
VNLSTGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKEGDILE
SGSHEELLAKNGFYAELYNSQFDQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=970218 MHI25_RS15885 WP_036677200.1 3552636..3554396(-) (rcrQ) [Paenibacillus sp. FSL E2-0177]
ATGAACAAAAGCAAAGAGCAACTCAACACGTGGAGCAAACTTCTCCACTATTGCAGAAAATATATCCCTGTAGTTCTTAT
AGCTATTATTAGTGCAGCAATCGGTACGGTTCTGACTCTGCTTGGACCGGATAAGCTTTCGGAGATGACAGACTTGATCA
CGGCCGGCCTCGTCACCGGAATTGATATGGAAGCAGTAACTTCTATCGGCCTTTTCCTTGTATTTATCTATATCCTTAGC
GCTGTGTTATCTTTGGTACAAGGATTAATTATGTCCGCAGTTACGCAAAAGGTCTCCAAAAACTTAAGAGCCGATCTCTC
ACGCAAAATGAACAAACTTCCGATCTCTTATTATAATAATTCTACAACCGGTGACATCCTGTCCCGGGTTACCAACGATG
TGGATACGATCGGGCAAGCTTTAAACCAAAGCGTAGGCACATTGGTAACTGCCCTTGCCCTCTTTACGGGATCCATCATC
ATGATGTTCAAAACAAATGTAATCATGACTATTACGGCGGTAGTTGCAACTATCATTGGCTTTGGCCTCATAGCGGCAAT
TATGAAAAAATCCCAAAAGTATTTTCAAAGTCAGCAAGAATACTTAGGGAAAATCAATGGCCATGTGGAGGAAGTATATA
CAGGACATACTGTAGTGAAAGCCTACAATGGTGAATCACAAATGCGCAATACATTTGAATCCCTGAATATGAATCTCAAA
GATAGTGCATTTAAAGCGCAGTTCCTCTCCGGTCTTATGATGCCGATTATGATGTTTATAGGCAATCTAGGTTTTGTGGC
CGTTTGTGTAGTTGGTGCTGTACTTGCTATGAACGGAACGATATCCTTTGGGGTCATTGTAGCCTTTATACTGTATGTCC
GTTACTTTACACAACCGCTCTCTCAGATTGCTCAAGCCGCACAAAGTCTGCAATCGGCTTCCGCGGCAAGCAAACGTGTA
TTTGAGTTCCTCGATGCTGACGAAATGGACAATGAAAGTCATAAAGAAAGACATCTTAAAACTGCTGTGGGCAAAGTTGA
TTTTGAACATGTGCAATTTGCTTATGAAAATTCAGATAAACTTGTGATTAAAGATTTTTCTGCAGAGATTAAGCCTGGGC
AAAAAATTGCTATAGTCGGCCCTACCGGCGCAGGTAAAACTACACTGATAAATCTTCTAATACGGTTTAATGAATTAAAG
GGCGGAGAGATTTATATTGATGATACCCCCATCAGCAGCTTAACAAGAGAAAACATCCATGATCTATTCTGTATGGTCTT
GCAGGACACCTGGCTTTTTGAGGGCACTATCAGGGAAAATCTGGTGTACAACAAAACAGGTGTAACCGATAAAGAAGTTG
AAGATGCTTGTAAGTCGGTAGGCTTGCATCATTTCATTCAGACCTTAAGTGCCGGTTATAATACCATACTAAATGACAAA
GTTAATTTATCCACAGGCCAAAAGCAACAGCTTACGATCGCCCGCGCGATGCTCAAAAATGCCCCAATGCTCATCCTCGA
TGAAGCTACAAGCTCAGTCGATACAAGAACAGAGCTCTTGATTCAGCAGGCAATGGATAAGCTCATGGAGGGAAGAACCT
CTTTTGTTATTGCGCATAGACTCTCAACCATTAAGAACGCCGATGTGATTCTGGTTCTGAAGGAAGGCGATATCCTGGAA
AGCGGCAGCCACGAAGAACTACTTGCCAAAAATGGTTTTTATGCGGAGCTTTATAATAGCCAATTCGACCAAGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0X3U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.717

99.488

0.544

Multiple sequence alignment