Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NST50_RS16825 Genome accession   NZ_CP150305
Coordinates   3661133..3662893 (-) Length   586 a.a.
NCBI ID   WP_036677200.1    Uniprot ID   A0A1R0X3U5
Organism   Paenibacillus sp. FSL E2-0202     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3656133..3667893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST50_RS16810 (NST50_16810) - 3657523..3658428 (+) 906 WP_305953568.1 ABC transporter permease subunit -
  NST50_RS16815 (NST50_16815) - 3658454..3659377 (+) 924 WP_036677438.1 carbohydrate ABC transporter permease -
  NST50_RS16820 (NST50_16820) - 3659468..3661030 (+) 1563 WP_340396637.1 ABC transporter substrate-binding protein -
  NST50_RS16825 (NST50_16825) rcrQ 3661133..3662893 (-) 1761 WP_036677200.1 ABC transporter ATP-binding protein Regulator
  NST50_RS16830 (NST50_16830) rcrP 3662893..3664644 (-) 1752 WP_076130605.1 ABC transporter ATP-binding protein Regulator
  NST50_RS16835 (NST50_16835) - 3664764..3665819 (-) 1056 WP_081383288.1 HAMP domain-containing sensor histidine kinase -
  NST50_RS16840 (NST50_16840) - 3665816..3666490 (-) 675 WP_036677195.1 response regulator transcription factor -
  NST50_RS16845 (NST50_16845) - 3666816..3667781 (+) 966 WP_076281835.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64511.79 Da        Isoelectric Point: 6.5784

>NTDB_id=970146 NST50_RS16825 WP_036677200.1 3661133..3662893(-) (rcrQ) [Paenibacillus sp. FSL E2-0202]
MNKSKEQLNTWSKLLHYCRKYIPVVLIAIISAAIGTVLTLLGPDKLSEMTDLITAGLVTGIDMEAVTSIGLFLVFIYILS
AVLSLVQGLIMSAVTQKVSKNLRADLSRKMNKLPISYYNNSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFTGSII
MMFKTNVIMTITAVVATIIGFGLIAAIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNGESQMRNTFESLNMNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVVGAVLAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDADEMDNESHKERHLKTAVGKVDFEHVQFAYENSDKLVIKDFSAEIKPGQKIAIVGPTGAGKTTLINLLIRFNELK
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDKEVEDACKSVGLHHFIQTLSAGYNTILNDK
VNLSTGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKEGDILE
SGSHEELLAKNGFYAELYNSQFDQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=970146 NST50_RS16825 WP_036677200.1 3661133..3662893(-) (rcrQ) [Paenibacillus sp. FSL E2-0202]
ATGAACAAAAGCAAAGAGCAACTCAACACGTGGAGCAAACTTCTCCACTATTGCAGAAAATATATCCCTGTAGTTCTTAT
AGCTATTATTAGTGCAGCAATCGGTACGGTTCTGACTCTGCTTGGACCGGATAAGCTTTCGGAGATGACAGACTTGATCA
CGGCCGGCCTCGTCACCGGAATTGATATGGAAGCAGTAACTTCTATCGGCCTTTTCCTTGTATTTATCTATATCCTTAGC
GCTGTGTTATCTTTGGTACAAGGATTAATTATGTCCGCAGTTACGCAAAAGGTCTCCAAAAACTTAAGAGCCGATCTCTC
ACGCAAAATGAACAAACTTCCGATCTCTTATTATAATAATTCTACAACCGGTGACATCCTGTCCCGGGTTACCAACGATG
TGGATACGATCGGGCAAGCTTTAAACCAAAGCGTCGGCACACTGGTAACTGCCCTTGCCCTCTTTACGGGATCCATCATC
ATGATGTTCAAAACAAATGTGATCATGACTATTACGGCGGTTGTTGCAACTATCATTGGCTTTGGCCTCATAGCGGCAAT
TATGAAAAAATCCCAAAAGTATTTTCAAAGTCAGCAAGAATACTTAGGGAAAATCAATGGCCATGTGGAGGAAGTATATA
CAGGACATACTGTAGTGAAAGCCTACAATGGTGAATCGCAAATGCGCAATACATTTGAATCCCTGAATATGAATCTTAAA
GATAGTGCATTTAAAGCGCAGTTCCTCTCCGGTCTTATGATGCCGATTATGATGTTTATAGGCAATCTAGGTTTTGTGGC
CGTTTGTGTAGTTGGTGCTGTACTTGCTATGAACGGAACGATATCCTTTGGGGTCATTGTAGCCTTTATACTGTATGTCC
GTTACTTTACACAACCGCTCTCTCAGATTGCTCAAGCCGCACAAAGTCTGCAATCGGCTTCCGCGGCAAGCAAACGTGTC
TTTGAGTTCCTCGATGCTGACGAAATGGACAATGAAAGTCATAAAGAAAGACATCTTAAAACTGCTGTGGGCAAAGTGGA
TTTTGAACATGTGCAATTTGCTTATGAAAATTCAGATAAACTTGTGATTAAAGATTTTTCTGCAGAGATTAAGCCTGGGC
AAAAAATTGCTATAGTCGGCCCTACCGGCGCAGGTAAAACTACACTGATAAATCTTCTAATACGGTTTAATGAATTAAAG
GGCGGAGAAATATATATTGATGATACCCCCATCAGCAGCTTAACAAGAGAAAACATCCATGATCTATTCTGTATGGTCTT
GCAGGACACCTGGCTTTTTGAGGGCACTATCAGGGAAAATCTAGTGTACAACAAAACAGGTGTAACCGATAAAGAAGTTG
AAGATGCTTGTAAGTCGGTAGGCTTGCATCATTTCATTCAGACCTTAAGTGCCGGTTATAATACCATACTAAATGACAAA
GTTAATTTATCCACGGGCCAAAAGCAACAGCTTACGATCGCCCGCGCGATGCTCAAAAATGCCCCAATGCTCATCCTCGA
TGAAGCTACAAGCTCAGTCGATACAAGAACAGAGCTCTTGATTCAGCAGGCAATGGATAAGCTCATGGAAGGAAGAACCT
CTTTTGTTATTGCGCATAGACTCTCAACCATTAAGAACGCCGATGTGATTCTGGTTCTGAAGGAAGGCGATATCCTGGAA
AGCGGCAGCCACGAAGAACTACTTGCCAAAAATGGTTTTTATGCGGAGCTTTATAATAGCCAATTCGACCAAGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0X3U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.717

99.488

0.544

Multiple sequence alignment