Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MHH46_RS16040 Genome accession   NZ_CP150299
Coordinates   3604277..3606037 (-) Length   586 a.a.
NCBI ID   WP_036677200.1    Uniprot ID   A0A1R0X3U5
Organism   Paenibacillus sp. FSL H8-0175     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3599277..3611037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH46_RS16025 (MHH46_15980) - 3600667..3601572 (+) 906 WP_305953568.1 sugar ABC transporter permease -
  MHH46_RS16030 (MHH46_15985) - 3601586..3602521 (+) 936 WP_081383287.1 carbohydrate ABC transporter permease -
  MHH46_RS16035 (MHH46_15990) - 3602612..3604174 (+) 1563 WP_076130604.1 ABC transporter substrate-binding protein -
  MHH46_RS16040 (MHH46_15995) rcrQ 3604277..3606037 (-) 1761 WP_036677200.1 ABC transporter ATP-binding protein Regulator
  MHH46_RS16045 (MHH46_16000) rcrP 3606037..3607788 (-) 1752 WP_076190319.1 ABC transporter ATP-binding protein Regulator
  MHH46_RS16050 (MHH46_16005) - 3607908..3608963 (-) 1056 WP_081386330.1 HAMP domain-containing sensor histidine kinase -
  MHH46_RS16055 (MHH46_16010) - 3608960..3609634 (-) 675 WP_076184972.1 response regulator transcription factor -
  MHH46_RS16060 (MHH46_16015) - 3609960..3610925 (+) 966 WP_076190318.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64511.79 Da        Isoelectric Point: 6.5784

>NTDB_id=969936 MHH46_RS16040 WP_036677200.1 3604277..3606037(-) (rcrQ) [Paenibacillus sp. FSL H8-0175]
MNKSKEQLNTWSKLLHYCRKYIPVVLIAIISAAIGTVLTLLGPDKLSEMTDLITAGLVTGIDMEAVTSIGLFLVFIYILS
AVLSLVQGLIMSAVTQKVSKNLRADLSRKMNKLPISYYNNSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFTGSII
MMFKTNVIMTITAVVATIIGFGLIAAIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNGESQMRNTFESLNMNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVVGAVLAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDADEMDNESHKERHLKTAVGKVDFEHVQFAYENSDKLVIKDFSAEIKPGQKIAIVGPTGAGKTTLINLLIRFNELK
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDKEVEDACKSVGLHHFIQTLSAGYNTILNDK
VNLSTGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKEGDILE
SGSHEELLAKNGFYAELYNSQFDQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=969936 MHH46_RS16040 WP_036677200.1 3604277..3606037(-) (rcrQ) [Paenibacillus sp. FSL H8-0175]
ATGAACAAAAGCAAAGAGCAACTCAACACGTGGAGCAAACTTCTCCACTATTGCAGAAAATATATCCCTGTAGTTCTTAT
AGCTATTATTAGTGCAGCAATCGGTACGGTTCTGACTCTGCTTGGACCGGATAAGCTTTCGGAGATGACAGACTTGATCA
CGGCCGGCCTCGTCACCGGAATTGATATGGAAGCAGTAACTTCTATCGGCCTTTTCCTTGTATTTATCTATATCCTTAGC
GCTGTGTTATCTTTGGTACAAGGATTAATTATGTCCGCAGTTACGCAAAAGGTCTCCAAAAACTTAAGAGCCGATCTCTC
ACGCAAAATGAACAAACTTCCGATCTCTTATTATAATAATTCTACAACCGGTGACATCCTGTCCCGGGTTACCAACGATG
TGGATACGATCGGGCAAGCTTTAAACCAAAGCGTAGGCACATTGGTAACTGCCCTTGCCCTCTTTACGGGATCCATCATC
ATGATGTTCAAAACAAATGTAATCATGACTATTACGGCGGTAGTTGCAACTATCATTGGCTTTGGCCTCATAGCGGCAAT
TATGAAAAAATCCCAAAAGTATTTTCAAAGTCAGCAAGAATACTTAGGGAAAATCAATGGCCATGTGGAGGAAGTATATA
CAGGACATACTGTAGTGAAAGCCTACAATGGTGAATCACAAATGCGCAATACATTTGAATCCCTGAATATGAATCTCAAA
GATAGTGCATTTAAAGCGCAGTTCCTCTCCGGTCTTATGATGCCGATTATGATGTTTATAGGCAATCTAGGTTTTGTGGC
CGTTTGTGTAGTTGGTGCTGTACTTGCTATGAACGGAACGATATCCTTTGGGGTCATTGTAGCCTTTATACTGTATGTCC
GTTACTTTACACAACCGCTCTCTCAGATTGCTCAAGCCGCACAAAGTCTGCAATCGGCTTCCGCGGCAAGCAAACGTGTC
TTTGAGTTCCTCGATGCTGACGAAATGGACAATGAAAGTCATAAAGAAAGACATCTTAAAACTGCTGTGGGCAAAGTTGA
TTTTGAACATGTGCAATTTGCTTATGAAAATTCAGATAAACTTGTGATTAAAGATTTTTCTGCAGAGATTAAGCCTGGGC
AAAAAATTGCTATAGTCGGCCCTACCGGCGCAGGTAAAACTACACTGATAAATCTTCTAATACGGTTTAATGAATTAAAG
GGCGGAGAGATTTATATTGATGATACCCCCATCAGCAGCTTAACAAGAGAAAACATCCATGATCTATTCTGTATGGTCTT
GCAGGACACCTGGCTTTTTGAGGGCACTATCAGGGAAAATCTGGTGTACAACAAAACAGGTGTAACCGATAAAGAAGTTG
AAGATGCTTGTAAGTCGGTAGGCTTGCATCATTTCATTCAGACCTTAAGTGCCGGTTACAATACCATACTAAATGACAAG
GTTAATTTATCCACCGGCCAAAAGCAACAGCTTACCATCGCCCGCGCGATGCTCAAGAATGCTCCAATGCTCATCCTCGA
TGAAGCTACAAGCTCAGTCGATACAAGAACAGAGCTCTTGATTCAGCAGGCAATGGATAAGCTTATGGAAGGAAGAACCT
CCTTTGTTATTGCGCATAGACTCTCAACCATTAAGAACGCCGATGTGATTCTGGTTCTGAAGGAAGGCGATATCCTGGAA
AGCGGCAGCCACGAAGAACTACTTGCCAAAAATGGTTTCTATGCGGAGCTTTATAATAGCCAATTCGACCAAGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0X3U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.717

99.488

0.544

Multiple sequence alignment