Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACJWMD_RS10425 Genome accession   NZ_CP177182
Coordinates   2174962..2175744 (+) Length   260 a.a.
NCBI ID   WP_002887175.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2169962..2180744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS10400 - 2171096..2171962 (+) 867 WP_411888489.1 hypothetical protein -
  ACJWMD_RS10405 - 2171971..2172366 (+) 396 WP_411888490.1 DUF3854 domain-containing protein -
  ACJWMD_RS10410 - 2172398..2172970 (+) 573 WP_002887172.1 hypothetical protein -
  ACJWMD_RS10415 - 2173108..2174571 (+) 1464 WP_002887173.1 hypothetical protein -
  ACJWMD_RS10420 - 2174585..2174965 (+) 381 WP_002887174.1 helix-turn-helix domain-containing protein -
  ACJWMD_RS10425 comGA 2174962..2175744 (+) 783 WP_002887175.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  ACJWMD_RS10430 - 2175760..2176200 (+) 441 WP_002887176.1 Cas9 inhibitor AcrIIA9 family protein -
  ACJWMD_RS10435 - 2176260..2177807 (+) 1548 WP_002887177.1 PcfJ domain-containing protein -
  ACJWMD_RS10440 - 2177924..2178271 (+) 348 WP_002887178.1 hypothetical protein -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29118.26 Da        Isoelectric Point: 4.7656

>NTDB_id=969894 ACJWMD_RS10425 WP_002887175.1 2174962..2175744(+) (comGA) [Streptococcus salivarius strain MRD6060]
MIVNNILKEAIDNNIQDITFFPHGEDYEVAFRNSDVKQVHDFISSEDADALFGHIKFMADMDVTEKRCSQVRTCDYQLDD
GRVITIRISTIVNFQGLETMSIRLIHVNERRISSSEFDSSCMEEVLEQVRIPGLHVITGPAGVGKTTLAYSLLSEAFKGG
KVMTIERYVEIKDVSFCQLQVNEANGMELEKLVTFVLRFNPDVLFIGEANTQEEVEAVLKAISAGLSVVTTVHKDGFSIP
HDVLEMKQGKDGKRNVALIK

Nucleotide


Download         Length: 783 bp        

>NTDB_id=969894 ACJWMD_RS10425 WP_002887175.1 2174962..2175744(+) (comGA) [Streptococcus salivarius strain MRD6060]
ATGATTGTAAACAATATTTTAAAAGAAGCTATCGATAATAATATCCAAGATATTACCTTCTTCCCACATGGTGAAGATTA
CGAGGTAGCATTTAGAAATTCTGATGTTAAACAGGTCCATGACTTCATTTCATCAGAAGATGCGGATGCTCTATTTGGTC
ATATTAAATTTATGGCTGATATGGACGTAACCGAAAAACGTTGTAGTCAGGTAAGAACTTGTGACTATCAGTTGGACGAT
GGTAGAGTCATAACCATTAGGATATCGACGATAGTTAATTTTCAAGGATTAGAAACGATGTCTATCCGACTTATTCATGT
GAATGAGCGAAGAATATCTTCGAGTGAGTTTGATAGTAGTTGTATGGAAGAAGTGCTTGAACAAGTACGCATTCCAGGCT
TGCACGTCATTACTGGTCCTGCAGGTGTTGGCAAAACGACTTTAGCCTACTCGTTACTTTCTGAGGCTTTTAAAGGAGGA
AAAGTAATGACAATTGAAAGATATGTCGAAATAAAAGATGTATCTTTTTGCCAGCTACAAGTCAATGAGGCTAACGGTAT
GGAACTGGAAAAGCTCGTGACTTTTGTATTACGCTTCAACCCTGACGTCTTGTTTATTGGTGAAGCTAATACACAAGAAG
AAGTAGAAGCAGTACTTAAGGCTATTTCTGCAGGATTAAGTGTCGTTACAACAGTTCATAAAGATGGCTTTTCAATCCCA
CATGATGTTTTAGAAATGAAACAAGGAAAAGATGGGAAACGAAATGTAGCTTTGATTAAATAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(5-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Streptococcus gordonii str. Challis substr. CH1

39.669

93.077

0.369