Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACJWMD_RS08365 Genome accession   NZ_CP177182
Coordinates   1769103..1769888 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1764103..1774888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS08340 gatA 1764520..1765986 (-) 1467 WP_004183310.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  ACJWMD_RS08345 gatC 1765986..1766288 (-) 303 WP_002884769.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  ACJWMD_RS08350 - 1766428..1766868 (-) 441 Protein_1595 glycosyltransferase -
  ACJWMD_RS08355 - 1766889..1768328 (-) 1440 WP_037605656.1 6-phospho-beta-glucosidase -
  ACJWMD_RS08360 - 1768485..1769036 (-) 552 WP_004183314.1 cysteine hydrolase family protein -
  ACJWMD_RS08365 codY 1769103..1769888 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACJWMD_RS08370 - 1770156..1771370 (-) 1215 WP_004183315.1 pyridoxal phosphate-dependent aminotransferase -
  ACJWMD_RS08375 - 1771734..1772186 (+) 453 WP_002891687.1 universal stress protein -
  ACJWMD_RS08380 - 1772265..1773017 (-) 753 WP_004183318.1 hypothetical protein -
  ACJWMD_RS08385 pflA 1773087..1773887 (-) 801 WP_002891689.1 pyruvate formate-lyase-activating protein -
  ACJWMD_RS08390 - 1774074..1774784 (-) 711 WP_004183320.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=969863 ACJWMD_RS08365 WP_002884784.1 1769103..1769888(-) (codY) [Streptococcus salivarius strain MRD6060]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=969863 ACJWMD_RS08365 WP_002884784.1 1769103..1769888(-) (codY) [Streptococcus salivarius strain MRD6060]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGATAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTAGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAAGAATACACA
CGTGGAATCAGCCGTGTTTATGACACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCTGTGGAATCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGGATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGACCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACGGTTGTTGGTTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAAACAGCTATCAACATGGCAATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGCCGCTTGACAGCGTCTGTCATCGCTGACCGTA
TCGGAATTACCCGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502