Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACJWMC_RS10015 Genome accession   NZ_CP177181
Coordinates   2120089..2121357 (-) Length   422 a.a.
NCBI ID   WP_037598551.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD1919     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2115089..2126357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMC_RS09980 - 2116383..2116892 (-) 510 WP_002892102.1 helix-turn-helix domain-containing protein -
  ACJWMC_RS09985 - 2117101..2117283 (+) 183 WP_080551212.1 hypothetical protein -
  ACJWMC_RS09990 - 2117329..2118306 (+) 978 WP_002892104.1 hypothetical protein -
  ACJWMC_RS09995 - 2118318..2118506 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  ACJWMC_RS10000 - 2118508..2119647 (+) 1140 WP_002887076.1 site-specific integrase -
  ACJWMC_RS10015 rarA 2120089..2121357 (-) 1269 WP_037598551.1 replication-associated recombination protein A Machinery gene
  ACJWMC_RS10020 rpmB 2121527..2121715 (+) 189 WP_002885786.1 50S ribosomal protein L28 -
  ACJWMC_RS10025 - 2121842..2122108 (+) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  ACJWMC_RS10030 ruvX 2122108..2122527 (+) 420 WP_002887078.1 Holliday junction resolvase RuvX -
  ACJWMC_RS10035 - 2122635..2122940 (+) 306 WP_002887079.1 DUF1292 domain-containing protein -
  ACJWMC_RS10040 - 2123008..2124257 (-) 1250 Protein_1935 ISL3 family transposase -
  ACJWMC_RS10045 - 2124570..2126216 (+) 1647 WP_002892107.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46568.00 Da        Isoelectric Point: 5.8791

>NTDB_id=969769 ACJWMC_RS10015 WP_037598551.1 2120089..2121357(-) (rarA) [Streptococcus salivarius strain MRD1919]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=969769 ACJWMC_RS10015 WP_037598551.1 2120089..2121357(-) (rarA) [Streptococcus salivarius strain MRD1919]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATCTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTATCGTCAATGATTCTCTACGGGCCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACAGTTGATAGCAAGAAACGCCTG
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTCTGCTCCTAGATGAGATTCATCGTTTAGATAAAGCTAA
ACAAGACTTTTTATTACCACTCTTAGAGAATGGTAATATTATCATGATTGGGGCTACAACGGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATCCTA
GGTGTTTTAGAGGACAAGGAGCGTGGTTTTGACTTTGATGTCCAGTTAGATGATGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCAGCTTATAATTCGTTGGATCTAGCTGTCATGTCGACGCCAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTGCTCTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCATTATGCAGCGCGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCGCGGCGCTTGACTGTGATTGCATACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACTGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGTATTTTGATAGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
AAATTTACCGATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCCGAAAAGTGGGTCAAGCAACAATACCTTCCAGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATTGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.382

99.289

0.6