Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACJVG6_RS09920 Genome accession   NZ_CP177180
Coordinates   2078928..2080196 (-) Length   422 a.a.
NCBI ID   WP_002887077.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2073928..2085196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS09885 - 2075221..2075730 (-) 510 WP_002885824.1 helix-turn-helix domain-containing protein -
  ACJVG6_RS09890 - 2075940..2076122 (+) 183 WP_073686738.1 hypothetical protein -
  ACJVG6_RS09895 - 2076168..2077145 (+) 978 WP_002887075.1 hypothetical protein -
  ACJVG6_RS09900 - 2077157..2077345 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  ACJVG6_RS09905 - 2077347..2078486 (+) 1140 WP_002887076.1 site-specific integrase -
  ACJVG6_RS09920 rarA 2078928..2080196 (-) 1269 WP_002887077.1 replication-associated recombination protein A Machinery gene
  ACJVG6_RS09925 rpmB 2080366..2080554 (+) 189 WP_002885786.1 50S ribosomal protein L28 -
  ACJVG6_RS09930 - 2080681..2080947 (+) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  ACJVG6_RS09935 ruvX 2080947..2081366 (+) 420 WP_002887078.1 Holliday junction resolvase RuvX -
  ACJVG6_RS09940 - 2081473..2081778 (+) 306 WP_002887079.1 DUF1292 domain-containing protein -
  ACJVG6_RS09945 - 2081860..2083109 (-) 1250 Protein_1901 ISL3 family transposase -
  ACJVG6_RS09950 - 2083410..2085056 (+) 1647 WP_002887081.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46598.07 Da        Isoelectric Point: 5.8803

>NTDB_id=969650 ACJVG6_RS09920 WP_002887077.1 2078928..2080196(-) (rarA) [Streptococcus salivarius strain MRD-KRBY]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTLASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=969650 ACJVG6_RS09920 WP_002887077.1 2078928..2080196(-) (rarA) [Streptococcus salivarius strain MRD-KRBY]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATTTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTGTCGTCAATGATTCTCTACGGGCCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACTGTTGATAGCAAGAAACGCCTG
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTCTGCTTCTAGATGAGATTCATCGTTTGGATAAAGCTAA
ACAAGACTTTTTATTGCCACTCTTAGAGAATGGCAATATTATCATGATTGGGGCTACGACGGAGAATCCGTTTTTTTCTG
TCACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATCCTA
GGTGTTCTAGAGGACAAGGAGCGTGGCTTTGACTTTGATGTCCAGTTAGATGAGGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCCTTAGATTTAGCTGTCATGTCGACGCTAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTACTTTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCACTATGCAGCACGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCACGACGCTTGACTGTGATTGCGTACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGAATTTTGATTGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
AAATTTACCGATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCTGAAAAGTGGGTCAAACAACAATATCTTCCGGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATCGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.143

99.289

0.597