Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACJVC4_RS08475 Genome accession   NZ_CP177179
Coordinates   1829338..1830123 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1824338..1835123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS08450 gatA 1824701..1826167 (-) 1467 WP_002891679.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  ACJVC4_RS08455 gatC 1826167..1826469 (-) 303 WP_002884769.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  ACJVC4_RS08460 - 1826609..1827049 (-) 441 Protein_1627 glycosyltransferase -
  ACJVC4_RS08465 - 1827070..1828509 (-) 1440 WP_002891683.1 6-phospho-beta-glucosidase -
  ACJVC4_RS08470 - 1828721..1829272 (-) 552 WP_002891684.1 cysteine hydrolase family protein -
  ACJVC4_RS08475 codY 1829338..1830123 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACJVC4_RS08480 - 1830391..1831605 (-) 1215 WP_002891686.1 pyridoxal phosphate-dependent aminotransferase -
  ACJVC4_RS08485 - 1831969..1832421 (+) 453 WP_002891687.1 universal stress protein -
  ACJVC4_RS08490 - 1832499..1833251 (-) 753 WP_002891688.1 hypothetical protein -
  ACJVC4_RS08495 pflA 1833321..1834121 (-) 801 WP_002891689.1 pyruvate formate-lyase-activating protein -
  ACJVC4_RS08500 - 1834308..1835018 (-) 711 WP_037598426.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=969503 ACJVC4_RS08475 WP_002884784.1 1829338..1830123(-) (codY) [Streptococcus salivarius strain MRD-NRLLH]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=969503 ACJVC4_RS08475 WP_002884784.1 1829338..1830123(-) (codY) [Streptococcus salivarius strain MRD-NRLLH]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGAGTGGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAAGAGTACACA
CGTGGTATCAGCCGTGTTTATGATACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCAGTGGAGTCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGATCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATAGCCTCTACGGTAGTTGGGTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACGATTCGTAAACAAACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAACGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCATCTGTTATCGCTGACCGTA
TCGGAATTACGCGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGACAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502