Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MHH50_RS15430 Genome accession   NZ_CP150284
Coordinates   3484369..3486129 (-) Length   586 a.a.
NCBI ID   WP_076307836.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H3-0302     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3479369..3491129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH50_RS15415 (MHH50_15415) - 3480759..3481664 (+) 906 WP_305953568.1 ABC transporter permease subunit -
  MHH50_RS15420 (MHH50_15420) - 3481678..3482613 (+) 936 WP_081383287.1 carbohydrate ABC transporter permease -
  MHH50_RS15425 (MHH50_15425) - 3482704..3484266 (+) 1563 WP_076130604.1 ABC transporter substrate-binding protein -
  MHH50_RS15430 (MHH50_15430) rcrQ 3484369..3486129 (-) 1761 WP_076307836.1 ABC transporter ATP-binding protein Regulator
  MHH50_RS15435 (MHH50_15435) rcrP 3486129..3487880 (-) 1752 WP_076307837.1 ABC transporter ATP-binding protein Regulator
  MHH50_RS15440 (MHH50_15440) - 3488000..3489055 (-) 1056 WP_081383288.1 HAMP domain-containing sensor histidine kinase -
  MHH50_RS15445 (MHH50_15445) - 3489052..3489726 (-) 675 WP_036677195.1 response regulator transcription factor -
  MHH50_RS15450 (MHH50_15450) - 3490052..3491017 (+) 966 WP_076307838.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64543.85 Da        Isoelectric Point: 6.5784

>NTDB_id=969464 MHH50_RS15430 WP_076307836.1 3484369..3486129(-) (rcrQ) [Paenibacillus sp. FSL H3-0302]
MNKSKEQLNTWSKLLHYCRKYIPVVLIAIISAAIGTVLTLLGPDKLSEMTDLITAGLVTGIDMEAVTSIGLFLVFIYILS
AMLSLVQGLIMSAVTQKVSKNLRADLSRKMNKLPISYYNNSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFTGSII
MMFKTNVIMTITAVVATIIGFGLIAAIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNGESQMRNTFESLNMNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVVGAVLAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDADEMDNESHKERHLKTAVGKVDFEHVQFAYENSDKLVIKDFSAEIKPGQKIAIVGPTGAGKTTLINLLIRFNELK
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDKEVEDACKSVGLHHFIQTLSAGYNTILNDK
VNLSTGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKEGDILE
SGSHEELLAKNGFYAELYNSQFDQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=969464 MHH50_RS15430 WP_076307836.1 3484369..3486129(-) (rcrQ) [Paenibacillus sp. FSL H3-0302]
ATGAACAAAAGCAAAGAGCAACTCAACACGTGGAGCAAACTTCTCCACTATTGCAGAAAATATATCCCTGTAGTTCTTAT
AGCTATTATTAGTGCAGCAATCGGTACGGTTCTGACTCTGCTTGGACCGGATAAGCTTTCGGAGATGACAGACTTGATCA
CGGCCGGCCTCGTCACCGGAATTGATATGGAAGCAGTAACTTCTATCGGCCTTTTCCTTGTATTTATCTATATCCTTAGC
GCTATGTTATCTTTGGTACAAGGATTAATTATGTCCGCAGTTACGCAAAAGGTCTCCAAAAACTTAAGAGCCGATCTCTC
ACGCAAAATGAACAAACTTCCGATCTCTTATTATAATAATTCTACAACCGGTGACATCCTGTCCCGGGTTACCAACGATG
TGGATACGATCGGGCAAGCTTTAAACCAAAGCGTCGGCACACTGGTAACTGCCCTTGCCCTCTTTACGGGATCCATCATC
ATGATGTTCAAAACAAATGTGATCATGACTATTACGGCGGTTGTTGCAACTATCATTGGCTTTGGCCTCATAGCGGCAAT
TATGAAAAAATCCCAAAAGTATTTTCAAAGTCAGCAAGAATACTTAGGGAAAATCAATGGCCATGTGGAGGAAGTATATA
CAGGACATACTGTAGTGAAAGCCTACAATGGTGAATCGCAAATGCGCAATACATTTGAATCCCTGAATATGAATCTTAAA
GATAGTGCATTTAAAGCGCAGTTCCTCTCCGGTCTTATGATGCCGATTATGATGTTTATAGGCAATCTAGGTTTTGTGGC
CGTTTGTGTAGTTGGTGCTGTACTTGCTATGAACGGAACGATATCCTTTGGGGTCATTGTAGCCTTTATACTGTATGTCC
GTTACTTTACACAACCGCTCTCTCAGATTGCTCAAGCCGCACAAAGTCTGCAATCGGCTTCCGCGGCAAGCAAACGTGTC
TTTGAGTTCCTCGATGCTGACGAAATGGACAATGAAAGTCATAAAGAAAGACATCTTAAAACTGCTGTGGGCAAAGTTGA
TTTTGAACATGTGCAATTTGCTTATGAAAATTCAGATAAACTTGTGATTAAAGATTTTTCTGCAGAGATTAAGCCTGGGC
AAAAAATTGCTATAGTCGGCCCTACCGGCGCAGGTAAAACTACACTGATAAATCTTCTAATACGGTTTAATGAATTAAAG
GGCGGAGAAATATATATTGATGATACCCCCATCAGCAGCTTAACAAGAGAAAACATCCATGATCTATTCTGTATGGTCTT
GCAGGACACCTGGCTTTTTGAGGGCACTATCAGGGAAAATCTAGTGTACAACAAAACAGGTGTAACCGATAAAGAAGTTG
AAGATGCTTGTAAGTCGGTAGGCTTGCATCATTTCATTCAGACCTTAAGTGCCGGTTATAATACCATACTAAATGACAAA
GTTAATTTATCCACGGGCCAAAAGCAACAGCTTACGATCGCCCGCGCGATGCTCAAAAATGCACCAATGCTCATCCTCGA
TGAAGCTACAAGCTCAGTCGATACAAGAACAGAGCTCTTGATTCAGCAGGCAATGGATAAGCTCATGGAGGGAAGAACCT
CTTTTGTTATTGCGCATAGACTCTCAACCATTAAGAACGCCGATGTGATTCTGGTTCTGAAGGAAGGCGATATCCTGGAA
AGCGGCAGCCACGAAGAACTACTTGCCAAAAATGGTTTTTATGCGGAGCTTTATAATAGCCAATTCGACCAAGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.717

99.488

0.544

Multiple sequence alignment