Detailed information    

insolico Bioinformatically predicted

Overview


Name   recJ   Type   Machinery gene
Locus tag   MHB50_RS06665 Genome accession   NZ_CP150282
Coordinates   1423790..1426156 (+) Length   788 a.a.
NCBI ID   WP_339162778.1    Uniprot ID   -
Organism   Siminovitchia sp. FSL H7-0308     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1418790..1431156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB50_RS06650 (MHB50_06650) - 1420034..1420348 (+) 315 WP_339162772.1 post-transcriptional regulator -
  MHB50_RS06655 (MHB50_06655) secDF 1420440..1422707 (+) 2268 WP_339162774.1 protein translocase subunit SecDF -
  MHB50_RS06660 (MHB50_06660) - 1422795..1423712 (+) 918 WP_339162777.1 cation diffusion facilitator family transporter -
  MHB50_RS06665 (MHB50_06665) recJ 1423790..1426156 (+) 2367 WP_339162778.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MHB50_RS06670 (MHB50_06670) - 1426147..1426659 (+) 513 WP_077110540.1 adenine phosphoribosyltransferase -
  MHB50_RS06675 (MHB50_06675) - 1427132..1429321 (+) 2190 WP_077110542.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MHB50_RS06680 (MHB50_06680) dtd 1429338..1429793 (+) 456 WP_077110544.1 D-aminoacyl-tRNA deacylase -

Sequence


Protein


Download         Length: 788 a.a.        Molecular weight: 88764.06 Da        Isoelectric Point: 5.9341

>NTDB_id=969393 MHB50_RS06665 WP_339162778.1 1423790..1426156(+) (recJ) [Siminovitchia sp. FSL H7-0308]
MLQAKTRWIVHDTNRDKVQKLAKQLEISTLAATLLVNRGFDSPEEASIFLHMEDNQFHDPFLMPDMEKAVERIKRAVNNK
EPILVFGDYDADGVTSTSLLTTVLQEMGAVVDFYIPNRFTEGYGPNEAAFRKAFDEGVQLIITVDTGISAIHEALVAKEL
GIDLIITDHHELRDEIPEAHAIIHPKLKEDAYPFPYLAGVGVAFKLAHALYGKVPYDLLDLVAIGTVCDLVPLIGENRLI
VKKGLLILSSTKRPGLLALGKTAGIQFADLSEETLGFTIGPRLNAAGRLDSAVPAANLLMAKHADEAALLADEIEILNKE
RQTLVSEMTKEAVDMISMSYPLSENKVLVIGKEGWNAGVIGIVASRITEQFYRPAIVLSYDSHTGQAKGSARSIRGFDLF
ANLLECADILPHFGGHPMAAGMTLDMQDVDELRERLNRAANNQLSAKDLVPVTELEASISLDDITLDTIKEVERLAPFGV
ANPKPAFMVKNAAVNHVRKIGGNDAHLKLTLSQNDMLLDGVGFHLGKLADDISPDAKLSVIGELSINEWNNRRKPQIFIR
DMAINEWQLFDFRGNKPFKTWVPLLHGKDAEFIVFHEKTLSRVPELRNVRTVLIPSEERAQEYRMDGKNVVLVDFPFETA
IIEGLVKGKKPDRIYVHFFHEREHFFHTIPTRDHFKWYYAFLAKRRTFNVKKYGEDLAAYRGWSKETVQFMTQVFFELDF
VKIDEGIISLKQAKMKKDLADSPSFQKKQEMIKLENILLYSSYPELKKWFEERVAHSIPHEEEVEAWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=969393 MHB50_RS06665 WP_339162778.1 1423790..1426156(+) (recJ) [Siminovitchia sp. FSL H7-0308]
ATGTTACAAGCAAAAACCCGCTGGATCGTCCATGATACAAACAGAGACAAGGTTCAAAAACTGGCCAAACAGCTTGAAAT
TAGCACACTTGCCGCAACATTGCTTGTCAATCGTGGATTTGATTCTCCTGAAGAAGCAAGCATTTTTTTACATATGGAAG
ATAACCAATTTCATGATCCATTTTTAATGCCTGATATGGAAAAAGCGGTAGAACGAATTAAGAGGGCGGTTAACAACAAA
GAACCGATCCTTGTATTTGGCGATTATGATGCGGACGGTGTTACCAGCACATCTTTATTGACAACTGTTTTACAGGAAAT
GGGAGCCGTAGTTGATTTTTACATACCAAACCGTTTTACAGAAGGCTACGGACCGAATGAAGCTGCTTTCCGAAAGGCTT
TTGACGAAGGCGTTCAGTTAATCATTACAGTTGATACCGGCATTTCAGCCATACACGAAGCATTAGTGGCCAAAGAGCTT
GGTATTGATTTAATTATTACGGATCACCATGAATTGCGAGACGAAATTCCGGAAGCCCATGCCATTATTCATCCCAAATT
GAAGGAAGACGCCTATCCTTTTCCCTATCTGGCCGGAGTGGGTGTCGCCTTTAAGCTTGCTCATGCACTATACGGAAAAG
TTCCGTATGACTTGCTGGATTTGGTGGCCATTGGCACGGTCTGTGATCTAGTGCCACTTATAGGTGAAAATCGCCTTATT
GTCAAGAAAGGGTTGCTGATCCTCTCTTCCACAAAAAGGCCCGGGTTGCTTGCCCTTGGCAAAACGGCAGGCATTCAGTT
TGCCGATCTGAGCGAAGAAACGCTTGGTTTTACAATTGGTCCCCGGCTGAATGCTGCGGGAAGGCTTGATAGTGCCGTTC
CCGCGGCAAATTTGTTGATGGCGAAACATGCCGATGAGGCGGCTCTTTTGGCTGATGAAATTGAGATTTTAAATAAAGAA
CGGCAAACTCTCGTATCAGAAATGACAAAAGAAGCGGTTGACATGATCTCCATGTCTTATCCTCTTTCCGAAAACAAAGT
ACTTGTGATTGGCAAAGAAGGTTGGAATGCCGGCGTGATCGGCATTGTCGCTTCAAGGATTACCGAACAGTTTTACCGGC
CAGCAATTGTATTAAGTTATGATTCGCATACTGGACAGGCAAAAGGCTCCGCTCGAAGTATTCGCGGGTTTGATTTGTTT
GCCAATTTATTGGAGTGTGCCGATATCCTTCCTCATTTCGGCGGACACCCTATGGCAGCCGGTATGACACTTGATATGCA
AGATGTCGATGAACTTCGAGAGCGGCTGAACCGGGCGGCGAACAACCAGCTCAGTGCCAAAGATTTAGTTCCCGTTACAG
AGCTGGAAGCTTCCATTTCACTCGATGACATTACTTTGGACACGATCAAAGAAGTGGAGCGGCTTGCTCCTTTTGGAGTA
GCCAACCCGAAGCCTGCATTCATGGTTAAAAATGCCGCTGTCAATCATGTCAGAAAAATAGGCGGAAATGATGCCCATTT
AAAATTGACTTTAAGTCAAAACGATATGTTATTAGATGGGGTCGGCTTTCATCTCGGGAAGCTCGCCGATGATATATCGC
CAGATGCCAAACTGTCGGTTATTGGAGAACTGTCCATCAATGAATGGAATAATAGGAGAAAGCCACAAATATTTATTAGG
GATATGGCCATCAACGAATGGCAGTTGTTCGACTTTCGGGGCAACAAGCCGTTTAAAACCTGGGTGCCCCTCCTTCACGG
CAAAGATGCGGAATTCATCGTCTTTCATGAAAAAACATTAAGTCGAGTTCCCGAATTGCGGAATGTGCGTACTGTGTTGA
TTCCAAGCGAAGAGCGAGCCCAAGAATATAGGATGGACGGCAAGAATGTCGTATTGGTTGATTTCCCTTTTGAAACAGCC
ATTATTGAAGGCTTGGTTAAAGGTAAAAAACCGGATCGGATCTACGTTCACTTTTTTCATGAACGAGAACATTTTTTTCA
TACAATTCCAACTCGCGATCATTTTAAATGGTATTATGCTTTTCTTGCAAAAAGGCGCACATTCAATGTGAAAAAATACG
GGGAAGATTTGGCGGCATACCGGGGCTGGTCCAAGGAAACTGTCCAGTTTATGACACAAGTGTTTTTTGAACTTGATTTT
GTTAAAATAGATGAAGGGATTATTTCTCTTAAACAGGCAAAAATGAAAAAAGATTTGGCGGATTCGCCTTCGTTTCAGAA
AAAACAAGAGATGATCAAACTTGAAAACATCTTGTTATATTCATCTTATCCCGAATTAAAAAAATGGTTTGAGGAGAGAG
TCGCGCACTCTATTCCACATGAGGAGGAAGTGGAAGCATGGACTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.332

97.97

0.513


Multiple sequence alignment