Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   ACLIMA_RS15985 Genome accession   NZ_CP177039
Coordinates   3012903..3015260 (-) Length   785 a.a.
NCBI ID   WP_009329338.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MPB04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3007903..3020260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMA_RS15960 (ACLIMA_15960) - 3008268..3009041 (-) 774 WP_003184191.1 electron transfer flavoprotein subunit beta/FixA family protein -
  ACLIMA_RS15965 (ACLIMA_15965) - 3009073..3009849 (-) 777 WP_003184194.1 enoyl-CoA hydratase -
  ACLIMA_RS15970 (ACLIMA_15970) - 3009852..3010454 (-) 603 WP_003184196.1 TetR/AcrR family transcriptional regulator -
  ACLIMA_RS15975 (ACLIMA_15975) - 3010591..3012270 (-) 1680 WP_003184197.1 AMP-binding protein -
  ACLIMA_RS15980 (ACLIMA_15980) - 3012480..3012884 (-) 405 WP_003184198.1 DUF350 domain-containing protein -
  ACLIMA_RS15985 (ACLIMA_15985) mutS/mutS2 3012903..3015260 (-) 2358 WP_009329338.1 endonuclease MutS2 Machinery gene
  ACLIMA_RS15990 (ACLIMA_15990) polX 3015277..3016992 (-) 1716 WP_003184202.1 DNA polymerase/3'-5' exonuclease PolX -
  ACLIMA_RS15995 (ACLIMA_15995) - 3017136..3017672 (-) 537 WP_003184204.1 CvpA family protein -
  ACLIMA_RS16000 (ACLIMA_16000) zapA 3017681..3017938 (-) 258 WP_003184205.1 cell division protein ZapA -
  ACLIMA_RS16005 (ACLIMA_16005) rnhC 3018088..3019029 (+) 942 WP_003184208.1 ribonuclease HIII -
  ACLIMA_RS16010 (ACLIMA_16010) - 3019364..3019570 (+) 207 Protein_3120 hypothetical protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87413.71 Da        Isoelectric Point: 5.7743

>NTDB_id=969239 ACLIMA_RS15985 WP_009329338.1 3012903..3015260(-) (mutS/mutS2) [Bacillus licheniformis strain MPB04]
MQQKALSALEFHKVKEQLTEHAASSLGKEMLLELKPSRSLEEVKKLQEEVDEAGTVLRLKGSAPFGGLTDIRKALRRAEI
GSILSPAELTEISGLLYAAKQMKHFLEGLFEDGVEIPYLHQYAEKLIPLSELERDINSCIDDHGEVLDHASETLRGIRTQ
LRTLESRIRDRLESMLRSSSAQKMLSDTIITIRNDRFVIPVKQEYRSSYGGIVHDQSSSGATLFIEPQAIVDMNNALRQA
KVNEKQEIERILRVLTEKTAEHTNELFHDVKVLQTLDFIFAKAKYAKATKAVKPAVNADGYVRLIQARHPLLPLDEVVPN
DIELGGEYTTIVITGPNTGGKTVTLKTLGLLTMMAQSGLHVPAEEGSETAVFDQVFADIGDEQSIEQSLSTFSSHMVNIV
DILKDMTENSLVLFDELGAGTDPQEGAALAISILDEVCQTGARVIATTHYPELKAYGYNRENVINASVEFDIDTLSPTYK
LLIGVPGRSNAFEISKRLGLPDYLIGRAKAEMTAEHNEVDTMIASLEDSKKRAEAELKETEAIRAEAEALHRDLQQQISE
WQEKKDKLYEEAEQKAAEKVKAAMKEADDIIQSLRMIKEDHKAFKDHELIEAKKRLEEAVPSFEKAKKPAQKKTDKRELK
PGDEVKVLTFGQKGTLLEKTGAAEWNVQIGILKMKVKEKDLEFLKSAPEPEKQKTIAAVKGKDYHVSLELDLRGERYENA
LHRVEKYLDDAVLAGYPRVSIIHGKGTGALRKGVQDLLKSHRNVKNSRFGEAGEGGSGVTIVELK

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=969239 ACLIMA_RS15985 WP_009329338.1 3012903..3015260(-) (mutS/mutS2) [Bacillus licheniformis strain MPB04]
TTGCAGCAAAAAGCGCTATCAGCACTTGAATTTCATAAAGTAAAAGAACAGCTCACAGAGCATGCGGCATCTTCTTTGGG
GAAGGAAATGCTTTTGGAACTCAAACCTTCCCGTTCGCTCGAAGAAGTTAAAAAGCTGCAGGAAGAAGTCGATGAAGCAG
GAACCGTCCTGCGTTTAAAAGGAAGCGCCCCTTTCGGCGGCCTTACGGACATTAGAAAAGCGTTAAGAAGGGCAGAAATC
GGCAGCATTTTAAGCCCGGCGGAATTGACTGAAATATCGGGTCTGCTATACGCAGCAAAACAGATGAAGCACTTTCTTGA
AGGCCTGTTCGAAGACGGGGTTGAGATTCCTTATCTTCATCAATATGCAGAAAAGCTCATACCGCTTTCCGAATTGGAAA
GGGACATCAATTCGTGCATCGATGATCATGGGGAAGTGCTTGATCATGCATCAGAGACGTTAAGGGGAATCAGGACCCAG
CTGCGGACGCTTGAATCAAGAATCAGGGACCGGCTGGAATCGATGCTGCGTTCTTCATCTGCGCAAAAAATGCTGTCGGA
TACGATCATCACGATTCGCAACGACCGCTTCGTCATCCCTGTCAAACAGGAGTACAGATCAAGCTACGGAGGAATCGTGC
ACGATCAGTCTTCTTCCGGTGCGACATTGTTTATCGAGCCTCAGGCGATTGTCGATATGAACAATGCGCTTCGCCAGGCA
AAAGTAAACGAAAAACAGGAGATTGAACGGATTTTGCGCGTCCTGACAGAAAAGACGGCAGAGCACACAAATGAGCTCTT
TCACGATGTCAAAGTGCTTCAGACGCTGGACTTTATTTTTGCAAAAGCAAAATATGCAAAAGCGACAAAAGCGGTTAAAC
CGGCTGTCAACGCTGACGGCTATGTCCGCCTGATTCAAGCCCGCCACCCGCTTTTGCCCCTGGATGAGGTCGTTCCGAAT
GATATTGAGCTCGGCGGAGAGTATACGACAATTGTCATCACGGGCCCGAACACGGGGGGGAAAACGGTGACGCTCAAAAC
GCTCGGGCTTTTGACCATGATGGCGCAGTCGGGATTGCACGTACCGGCGGAAGAAGGATCAGAGACCGCCGTATTTGATC
AAGTATTTGCCGATATCGGCGATGAACAGTCAATCGAACAAAGCTTAAGTACGTTCTCGTCGCATATGGTCAACATCGTC
GATATTTTGAAAGACATGACGGAAAACAGCCTTGTGCTTTTTGACGAGCTCGGTGCCGGAACAGACCCGCAGGAAGGCGC
GGCCCTTGCGATCAGCATCCTTGATGAGGTGTGCCAGACAGGCGCACGCGTCATTGCCACGACCCATTACCCGGAGCTGA
AGGCATACGGCTACAATCGCGAAAATGTCATTAATGCAAGCGTCGAATTTGATATCGATACACTATCACCGACATACAAG
CTTTTAATTGGAGTGCCCGGCCGAAGCAATGCGTTCGAAATCTCGAAGCGCCTCGGGCTGCCTGATTACCTGATCGGCCG
CGCAAAAGCGGAGATGACGGCCGAACATAATGAAGTTGATACGATGATCGCATCGCTGGAAGACAGCAAAAAGCGCGCAG
AAGCGGAGCTCAAGGAGACCGAAGCCATCCGCGCGGAAGCTGAAGCCCTTCACCGCGACCTGCAGCAGCAGATCAGCGAA
TGGCAGGAGAAAAAAGACAAGCTCTACGAAGAAGCGGAGCAAAAAGCGGCTGAAAAAGTCAAAGCAGCGATGAAAGAAGC
AGACGACATCATCCAGTCGCTCCGCATGATCAAAGAAGACCATAAAGCATTTAAAGACCATGAGCTGATCGAGGCGAAAA
AGCGCCTTGAAGAAGCCGTGCCTTCGTTTGAAAAAGCGAAAAAGCCGGCTCAGAAAAAAACGGACAAGCGCGAATTAAAA
CCGGGCGATGAAGTCAAAGTTTTAACCTTTGGCCAAAAAGGGACGCTGCTCGAAAAAACGGGTGCGGCCGAATGGAATGT
GCAAATCGGCATCCTGAAAATGAAGGTCAAGGAAAAGGATCTGGAATTCCTGAAATCGGCACCCGAACCCGAGAAACAAA
AAACGATCGCCGCCGTCAAAGGGAAAGATTATCACGTCTCGCTCGAACTCGACCTTAGGGGGGAGCGGTATGAAAATGCG
CTTCACCGGGTTGAAAAATACTTGGATGATGCGGTGCTTGCGGGCTATCCGAGAGTCTCGATCATTCACGGAAAAGGAAC
CGGCGCCCTCCGAAAAGGCGTCCAGGACCTATTGAAATCCCACCGCAATGTGAAAAACTCCCGGTTCGGCGAAGCGGGAG
AGGGAGGATCAGGAGTCACCATTGTCGAATTAAAATAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(641-681)

Smr domain (Smr)

(710-785)

MutS domain V (MutS_V)

(331-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

83.057

100

0.831