Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   OO773_RS08125 Genome accession   NZ_AP026769
Coordinates   1467745..1468518 (+) Length   257 a.a.
NCBI ID   WP_040499194.1    Uniprot ID   A0A6J4CZL4
Organism   Helicobacter suis HS1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1462745..1473518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO773_RS08090 (HSHS1_15970) - 1463019..1464128 (-) 1110 WP_264828531.1 DUF354 domain-containing protein -
  OO773_RS08095 (HSHS1_15980) - 1464125..1464835 (-) 711 WP_006564435.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  OO773_RS08105 - 1465083..1465274 (-) 192 WP_163499887.1 hypothetical protein -
  OO773_RS08110 (HSHS1_16000) - 1465389..1465817 (-) 429 WP_034376904.1 hypothetical protein -
  OO773_RS08115 (HSHS1_16010) - 1465801..1466487 (-) 687 WP_006564434.1 Bax inhibitor-1/YccA family protein -
  OO773_RS08120 (HSHS1_16020) - 1466597..1467604 (+) 1008 WP_006564433.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  OO773_RS08125 (HSHS1_16030) comB8 1467745..1468518 (+) 774 WP_040499194.1 VirB8/TrbF family protein Machinery gene
  OO773_RS08130 (HSHS1_16040) gatB 1468523..1469953 (-) 1431 WP_034376900.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  OO773_RS08135 (HSHS1_16050) hemH 1470174..1471193 (+) 1020 WP_006564431.1 ferrochelatase -
  OO773_RS08140 (HSHS1_16060) - 1471184..1471819 (+) 636 WP_006564430.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29505.06 Da        Isoelectric Point: 9.0939

>NTDB_id=96894 OO773_RS08125 WP_040499194.1 1467745..1468518(+) (comB8) [Helicobacter suis HS1]
MDSKEQDLLKEQLFHELYLKIQENQAKLEQEIASKIESLALSHLDLNSVFRIERRNSAMAYKLVVLLSLISLALTVALII
LLPLKQTQHHFIDFANQDKHYAIIQRADANLASNEALVRSLVGQYILNRESINHIDDQNRYEVVRLQSNSSVWHVFESLV
ASKNSIYTAPKMDRDIHIVNIALLKHSKNQNIAHVQIVAKLFDAGQLIQQKRYNIVLSFTFLPPPSFDTTMMPKNPTGFQ
VSRYSVTEMQDLKTLKP

Nucleotide


Download         Length: 774 bp        

>NTDB_id=96894 OO773_RS08125 WP_040499194.1 1467745..1468518(+) (comB8) [Helicobacter suis HS1]
ATGGATTCTAAGGAGCAAGACCTCCTCAAAGAACAACTTTTTCACGAATTGTATTTAAAAATCCAAGAGAATCAAGCCAA
ATTAGAACAGGAAATAGCTAGTAAGATTGAAAGTTTGGCTTTATCACACCTAGATTTAAATAGTGTGTTTCGGATTGAAA
GACGCAATAGTGCTATGGCTTATAAACTTGTGGTGCTATTAAGTCTGATTAGTTTAGCTTTAACCGTTGCGTTAATTATT
CTCTTGCCTCTTAAACAAACCCAGCACCATTTTATTGACTTTGCTAACCAAGATAAACACTATGCCATTATCCAAAGAGC
TGATGCAAATTTAGCCAGTAACGAAGCTTTAGTGCGTTCATTAGTAGGCCAATACATTTTAAACCGCGAATCTATTAACC
ACATTGACGATCAAAACCGCTATGAAGTGGTGCGTTTACAAAGTAACTCGTCAGTTTGGCATGTTTTTGAAAGTCTAGTC
GCCTCTAAAAATAGCATTTACACCGCCCCTAAAATGGATCGCGATATTCATATCGTCAATATTGCCTTGCTTAAACATTC
TAAGAATCAAAATATCGCCCATGTACAAATTGTGGCTAAACTCTTTGATGCGGGGCAATTAATCCAGCAAAAGCGCTATA
ACATCGTGCTTAGCTTTACTTTTTTGCCCCCGCCTTCTTTTGATACAACCATGATGCCTAAAAACCCTACTGGCTTTCAA
GTCAGCCGCTACAGCGTAACTGAAATGCAAGATCTAAAAACCCTCAAACCCTAA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(54-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6J4CZL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

52.033

95.72

0.498

Multiple sequence alignment