Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MHH68_RS07890 Genome accession   NZ_CP150266
Coordinates   1586622..1587401 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2841     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581622..1592401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH68_RS07870 (MHH68_07870) trmFO 1582326..1583630 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHH68_RS07875 (MHH68_07875) xerC 1583693..1584610 (+) 918 WP_339165711.1 tyrosine recombinase XerC -
  MHH68_RS07880 (MHH68_07880) hslV 1584625..1585170 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  MHH68_RS07885 (MHH68_07885) hslU 1585187..1586587 (+) 1401 WP_339165712.1 HslU--HslV peptidase ATPase subunit -
  MHH68_RS07890 (MHH68_07890) codY 1586622..1587401 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MHH68_RS07895 (MHH68_07895) flgB 1587689..1588078 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  MHH68_RS07900 (MHH68_07900) flgC 1588078..1588530 (+) 453 WP_058013998.1 flagellar basal body rod protein FlgC -
  MHH68_RS07905 (MHH68_07905) fliE 1588542..1588859 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  MHH68_RS07910 (MHH68_07910) fliF 1588909..1590501 (+) 1593 WP_058013996.1 flagellar basal-body MS-ring/collar protein FliF -
  MHH68_RS07915 (MHH68_07915) fliG 1590513..1591529 (+) 1017 WP_012009955.1 flagellar motor switch protein FliG -
  MHH68_RS07920 (MHH68_07920) fliH 1591522..1592286 (+) 765 WP_169056511.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=968725 MHH68_RS07890 WP_003210838.1 1586622..1587401(+) (codY) [Bacillus sp. FSL K6-2841]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=968725 MHH68_RS07890 WP_003210838.1 1586622..1587401(+) (codY) [Bacillus sp. FSL K6-2841]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAGGAATATACAAAGAGTCTATTC
AATATCCCTGAAACATCTTCAAATCTTGATATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTGCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTTAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAGTCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCAGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCTGGCGTCATCGAATCTCGCTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment