Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MKX80_RS14920 Genome accession   NZ_CP150260
Coordinates   2946032..2948380 (-) Length   782 a.a.
NCBI ID   WP_268342676.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2941032..2953380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS14900 (MKX80_14900) - 2941072..2942643 (+) 1572 WP_268342677.1 SH3 domain-containing protein -
  MKX80_RS14905 (MKX80_14905) dtd 2942674..2943117 (-) 444 WP_268314052.1 D-aminoacyl-tRNA deacylase -
  MKX80_RS14910 (MKX80_14910) - 2943131..2945332 (-) 2202 WP_154995793.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MKX80_RS14915 (MKX80_14915) - 2945502..2946014 (-) 513 WP_154995795.1 adenine phosphoribosyltransferase -
  MKX80_RS14920 (MKX80_14920) recJ 2946032..2948380 (-) 2349 WP_268342676.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MKX80_RS14925 (MKX80_14925) - 2948452..2948745 (-) 294 WP_154995799.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  MKX80_RS14930 (MKX80_14930) secDF 2948894..2951119 (-) 2226 WP_154995801.1 protein translocase subunit SecDF -
  MKX80_RS14935 (MKX80_14935) - 2951156..2951452 (-) 297 WP_043925422.1 post-transcriptional regulator -
  MKX80_RS14940 (MKX80_14940) spoVB 2951570..2953123 (+) 1554 WP_154995803.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87644.38 Da        Isoelectric Point: 4.8571

>NTDB_id=968470 MKX80_RS14920 WP_268342676.1 2946032..2948380(-) (recJ) [Bacillus sp. FSL K6-0972]
MLASKMRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGKDAVFHDPYLLKDMEKAVRRIKQAILDQ
EKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAAVHEAEVAKEL
GVDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
AKRGMEQFRKTKRPGLKALTKIAGAEIHSADEETIGFQIAPRLNAVGRIEQADPAVYLLNTEDETEAEELAEDINALNKE
RQKIVNQMTEEAVQMIEEEGLDQPVIVAARPGWNPGVVGIVASKLVERFYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNLEDVSALRERINLQAEAVLTEEDFIPVQDIDLCCRLEDITVDSIAEMNMLAPFGTGN
PKPFVLVSDVKIDDARKIGANKNHLKLVLADGENKLDCIGFYKGAIEEGIVPGAKISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEEKILQLDPAKRACICFREETKAKLAGTGLEEELTVISGPEDAERLDLENRYAVFIDIPQSLDI
FDHLIKGKKLERIYLIFNQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAENAGAYKV

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=968470 MKX80_RS14920 WP_268342676.1 2946032..2948380(-) (recJ) [Bacillus sp. FSL K6-0972]
ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACGCCCGACAAAGAAAAGGTGGAGCAGCTCGCCGGAAGGTTAGGCAT
TACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCATCTTCATTTTTATATGGCAAGG
ATGCTGTTTTTCACGATCCTTATCTGCTGAAAGATATGGAAAAAGCTGTACGGCGAATCAAACAGGCAATTTTAGATCAA
GAAAAGATTATGATTTACGGCGATTATGATGCGGACGGTGTGACAAGCACGACTGTCCTTTTACAAATGTTGAAAAAATG
TTCAGCACAAGCCGATTTTTATATACCTGACCGCTTTAAAGAAGGGTACGGCCCGAATGAAGCGGCCTTTCGCGGGATCA
AAGAATCAGGCTATTCATTGATCATCACAGTAGACACAGGCATTGCTGCCGTTCATGAAGCTGAAGTCGCCAAAGAGCTT
GGCGTCGATCTGATCATTACGGATCACCATGAGCCGGGCCCTGTTTTGCCGGATGCTTATGCGATCATTCATCCGAAACA
GCCGGGCTGCGGCTATCCATTTAAAGAGCTTGCCGGCGTCGGTGTGGCATTTAAGCTTGCCCATGCCTTGAACGGAGAGC
TCCCGGAAGATTTGCTCGACCTTTGTGCGATCGGCACGATTGCCGACCTTGTGCCGCTTCATGATGAAAACAGGCAGATT
GCCAAGCGCGGCATGGAACAGTTCAGGAAAACGAAGCGCCCCGGATTAAAAGCGCTGACCAAAATTGCCGGAGCGGAGAT
ACATAGTGCGGATGAAGAGACCATCGGTTTTCAAATCGCGCCCCGCTTAAACGCGGTCGGCAGAATTGAACAGGCTGACC
CGGCCGTTTACCTTCTGAACACAGAAGATGAAACAGAAGCGGAAGAGCTTGCTGAAGACATCAACGCCTTGAACAAGGAG
CGCCAAAAAATCGTCAATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGAGGAAGGCCTTGACCAGCCGGTGATCGT
CGCGGCGCGGCCGGGCTGGAACCCGGGCGTCGTTGGAATCGTGGCTTCAAAGCTTGTCGAGCGGTTTTACAGGCCCGCGA
TCGTCCTCGGCATCGATGAAGAAAAAGGCATCGCCAAAGGATCTGCGCGCAGCATCAAGGGATTTGATTTATTTCAAAAC
CTTTCAGAGTGCCGGGATATACTCCCGCACTTCGGCGGCCACCCGATGGCAGCCGGAATGACGCTCAATCTGGAAGATGT
TTCGGCTCTAAGGGAGAGAATCAACCTTCAGGCTGAAGCGGTTCTGACCGAGGAAGATTTTATTCCTGTCCAAGACATCG
ATTTGTGCTGCCGGCTCGAAGATATAACGGTTGACAGCATTGCCGAAATGAATATGCTGGCGCCGTTCGGCACGGGAAAC
CCGAAGCCGTTCGTTCTTGTCAGCGACGTTAAAATTGACGATGCCAGGAAAATCGGCGCCAACAAGAATCACTTGAAGCT
TGTCCTGGCAGACGGCGAGAACAAGCTCGATTGCATCGGATTTTATAAAGGCGCTATCGAAGAAGGAATCGTTCCTGGAG
CAAAGATCTCGATTGTCGGGGAACTGTCGATTAACGAGTGGAACAACAGAAAAAAACCGCAGCTGATGATCAAAGATGCG
GCCGTCAATGAATGGCAGCTGTTTGATCTGCGGGGAAAACGGTCATGGGAAGAAAAAATATTGCAGCTGGACCCTGCAAA
ACGGGCGTGCATCTGCTTCCGCGAGGAAACAAAAGCGAAGCTGGCAGGGACAGGTCTTGAAGAAGAGCTGACCGTCATCA
GCGGCCCTGAAGATGCAGAGCGTCTCGACCTTGAGAACCGCTATGCGGTATTTATAGATATTCCCCAGTCGCTCGACATT
TTTGATCATCTAATAAAAGGCAAAAAACTGGAGCGCATTTATCTGATTTTTAATCAATCAGACGAACATTTTTTCTCAAC
ATTTCCAACAAGGGAATATTTTAAATGGTACTATGCTTTCCTCCTGAAAAGAGGCTCTTTTGACTTGCCGAAATATGGCG
GAGAGCTTGCCAGACATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTTTATCATGCCGAAAAGCGCGATCTAACAGATTCTGAAACCTACCGGGAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCATTTATTCTTCGGCGGATGAGCTTAAACAGTGGCTGGATAAGCGGATGG
CGGAAAACGCCGGCGCTTATAAAGTATGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-435)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

69.142

99.872

0.691

Multiple sequence alignment