Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MKX80_RS09015 Genome accession   NZ_CP150260
Coordinates   1772171..1772950 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus sp. FSL K6-0972     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767171..1777950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS08995 (MKX80_08995) trmFO 1767868..1769172 (+) 1305 WP_154999501.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MKX80_RS09000 (MKX80_09000) xerC 1769239..1770153 (+) 915 WP_154999500.1 tyrosine recombinase XerC -
  MKX80_RS09005 (MKX80_09005) hslV 1770167..1770712 (+) 546 WP_043928298.1 ATP-dependent protease subunit HslV -
  MKX80_RS09010 (MKX80_09010) hslU 1770720..1772132 (+) 1413 WP_261763666.1 HslU--HslV peptidase ATPase subunit -
  MKX80_RS09015 (MKX80_09015) codY 1772171..1772950 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MKX80_RS09020 (MKX80_09020) flgB 1773302..1773691 (+) 390 WP_025804533.1 flagellar basal body rod protein FlgB -
  MKX80_RS09025 (MKX80_09025) flgC 1773691..1774143 (+) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  MKX80_RS09030 (MKX80_09030) fliE 1774157..1774474 (+) 318 WP_043926371.1 flagellar hook-basal body complex protein FliE -
  MKX80_RS09035 (MKX80_09035) fliF 1774525..1776126 (+) 1602 WP_154999498.1 flagellar basal-body MS-ring/collar protein FliF -
  MKX80_RS09040 (MKX80_09040) fliG 1776140..1777156 (+) 1017 WP_182070689.1 flagellar motor switch protein FliG -
  MKX80_RS09045 (MKX80_09045) fliH 1777140..1777907 (+) 768 WP_268293258.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=968451 MKX80_RS09015 WP_003181756.1 1772171..1772950(+) (codY) [Bacillus sp. FSL K6-0972]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=968451 MKX80_RS09015 WP_003181756.1 1772171..1772950(+) (codY) [Bacillus sp. FSL K6-0972]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAACTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTTTTC
AACATTCCGGAAACTTCATCTAACCTTGACATTAACAGCGAATACACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AGTTCGAGGATGACGATCTGATCCTTGCTGAATATGGCGCCACGGTCGTAGGAATGGAAATTCTCAGAGAAAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTTGTCCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCATTGCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTGCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment