Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OO774_RS14890 Genome accession   NZ_AP026763
Coordinates   3195158..3195880 (+) Length   240 a.a.
NCBI ID   WP_264903375.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3190158..3200880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS14875 (VspSTUT11_28190) - 3191315..3193645 (+) 2331 WP_264903372.1 Tex family protein -
  OO774_RS14880 (VspSTUT11_28200) - 3193728..3194192 (-) 465 WP_264903373.1 ATP-dependent Lon protease -
  OO774_RS14885 (VspSTUT11_28210) bioH 3194306..3195073 (-) 768 WP_264903374.1 pimeloyl-ACP methyl ester esterase BioH -
  OO774_RS14890 (VspSTUT11_28220) comF 3195158..3195880 (+) 723 WP_264903375.1 phosphoribosyltransferase family protein Machinery gene
  OO774_RS14895 (VspSTUT11_28230) nfuA 3195977..3196561 (+) 585 WP_014230546.1 Fe-S biogenesis protein NfuA -
  OO774_RS14900 (VspSTUT11_28240) nudE 3196722..3197285 (+) 564 WP_264903376.1 ADP compounds hydrolase NudE -
  OO774_RS14905 (VspSTUT11_28250) cysQ 3197330..3198157 (+) 828 WP_264903377.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OO774_RS14910 (VspSTUT11_28260) - 3198441..3199202 (-) 762 WP_264903378.1 type II secretion system protein N -
  OO774_RS14915 (VspSTUT11_28270) - 3199204..3199695 (-) 492 WP_264903379.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27412.51 Da        Isoelectric Point: 7.8173

>NTDB_id=96825 OO774_RS14890 WP_264903375.1 3195158..3195880(+) (comF) [Vibrio sp. STUT-A11]
MLSHHWQNIMHHVLGSQCGLCRLPLDTSQLPNPLRWCSHCFQYLNPIKRCQQCGLAMQETEIDDSVCGECLADPPPWQRL
ITLGDYAFPLSREVQRFKDHGESWHVDALTQLLATRITAPAPLITSVPLHWRRYLSRGFNQSDVLARHLATHLDSHFDPK
LFRRIKYADSQRGHKKSNREQNLQGAFVLNKKPIFEHVAIVDDVVTTGSTVRQLCQLLLEVGVESIDIYCICRTPAPTSL

Nucleotide


Download         Length: 723 bp        

>NTDB_id=96825 OO774_RS14890 WP_264903375.1 3195158..3195880(+) (comF) [Vibrio sp. STUT-A11]
ATGTTATCTCATCACTGGCAAAACATCATGCATCATGTGCTCGGCAGCCAATGCGGCTTGTGCAGGTTGCCTCTGGACAC
ATCGCAACTGCCTAACCCACTTCGCTGGTGTAGCCATTGCTTTCAGTACCTTAATCCAATTAAAAGGTGCCAACAATGTG
GTTTGGCTATGCAGGAAACAGAAATAGACGATTCAGTGTGTGGCGAGTGTTTAGCCGACCCGCCTCCCTGGCAACGACTC
ATCACTCTCGGTGACTATGCGTTTCCTCTGTCTCGCGAGGTTCAACGCTTTAAAGATCATGGCGAGAGTTGGCACGTCGA
CGCGCTGACTCAGTTGCTTGCCACTCGTATTACCGCGCCCGCTCCGCTTATCACCAGCGTTCCGCTGCATTGGCGACGCT
ATTTATCGCGCGGATTCAATCAAAGTGATGTGCTCGCCAGACACTTGGCAACCCATCTGGATAGCCATTTTGACCCCAAA
TTATTTCGTCGAATCAAATACGCAGATTCCCAACGAGGCCATAAAAAATCTAACCGGGAGCAAAATTTACAAGGGGCATT
TGTGCTCAATAAGAAGCCGATATTTGAACACGTAGCGATTGTCGATGATGTCGTCACAACGGGCAGTACGGTACGACAAT
TATGCCAATTACTACTTGAAGTTGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTACTTCGCTC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

69.71

100

0.7
  comF Vibrio cholerae strain A1552

52.743

98.75

0.521

Multiple sequence alignment