Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MKX71_RS08700 Genome accession   NZ_CP150256
Coordinates   1679364..1680143 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. FSL M8-0071     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1674364..1685143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX71_RS08680 (MKX71_08680) trmFO 1675057..1676364 (+) 1308 WP_327842763.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MKX71_RS08685 (MKX71_08685) xerC 1676432..1677346 (+) 915 WP_326227810.1 tyrosine recombinase XerC -
  MKX71_RS08690 (MKX71_08690) clpQ 1677359..1677904 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  MKX71_RS08695 (MKX71_08695) hslU 1677912..1679324 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  MKX71_RS08700 (MKX71_08700) codY 1679364..1680143 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MKX71_RS08705 (MKX71_08705) flgB 1680523..1680912 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  MKX71_RS08710 (MKX71_08710) flgC 1680912..1681364 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  MKX71_RS08715 (MKX71_08715) fliE 1681375..1681695 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  MKX71_RS08720 (MKX71_08720) fliF 1681741..1683351 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  MKX71_RS08725 (MKX71_08725) fliG 1683364..1684380 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  MKX71_RS08730 (MKX71_08730) fliH 1684373..1685125 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=968144 MKX71_RS08700 WP_003220850.1 1679364..1680143(+) (codY) [Bacillus sp. FSL M8-0071]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=968144 MKX71_RS08700 WP_003220850.1 1679364..1680143(+) (codY) [Bacillus sp. FSL M8-0071]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAACTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment