Detailed information NTG0968134

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: ACK2V6_RS05440
• Genome accession: NZ_CP176657
• Coordinates: 1173790..1175079 (+)
• Length: 429 a.a.
• NCBI ID: WP_021451553.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain GTVSS-032
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1168790..1180079

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK2V6_RS05425 (ACK2V6_05425)	lrp	1169289..1169783 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
ACK2V6_RS05430 (ACK2V6_05430)	-	1169936..1173022 (+)	3087	WP_005489025.1	DNA translocase FtsK	-
ACK2V6_RS05435 (ACK2V6_05435)	lolA	1173097..1173723 (+)	627	WP_005460060.1	outer membrane lipoprotein chaperone LolA	-
ACK2V6_RS05440 (ACK2V6_05440)	rarA	1173790..1175079 (+)	1290	WP_021451553.1	replication-associated recombination protein A	Machinery gene
ACK2V6_RS05445 (ACK2V6_05445)	serS	1175171..1176478 (+)	1308	WP_005487368.1	serine--tRNA ligase	-
ACK2V6_RS05450 (ACK2V6_05450)	-	1176564..1177550 (+)	987	WP_005479280.1	peptidoglycan-binding domain-containing protein	-
ACK2V6_RS05455 (ACK2V6_05455)	-	1177550..1178263 (+)	714	WP_005479276.1	hypothetical protein	-
ACK2V6_RS05460 (ACK2V6_05460)	-	1178404..1178670 (+)	267	WP_005479278.1	DksA/TraR family C4-type zinc finger protein	-
ACK2V6_RS05465 (ACK2V6_05465)	bioA	1178740..1180020 (-)	1281	WP_005487357.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47492.69 Da
• Isoelectric Point: 6.0291

>NTDB_id=968134 ACK2V6_RS05440 WP_021451553.1 1173790..1175079(+) (rarA) [Vibrio parahaemolyticus strain GTVSS-032]
MRPQTIGQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=968134 ACK2V6_RS05440 WP_021451553.1 1173790..1175079(+) (rarA) [Vibrio parahaemolyticus strain GTVSS-032]
ATGAGACCGCAAACTATTGGGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGTGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAGCTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGTCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAGGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.234	97.436	0.382