Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACK2V4_RS01010 Genome accession   NZ_CP176646
Coordinates   220832..221506 (+) Length   224 a.a.
NCBI ID   WP_005482037.1    Uniprot ID   Q87T86
Organism   Vibrio parahaemolyticus strain GTVSS-031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 215832..226506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2V4_RS00990 (ACK2V4_00990) - 215954..216904 (-) 951 WP_029823987.1 Kdo(2)-lipid IV(A) acyltransferase -
  ACK2V4_RS00995 (ACK2V4_00995) slmA 216910..217500 (-) 591 WP_005478760.1 nucleoid occlusion factor SlmA -
  ACK2V4_RS01000 (ACK2V4_01000) coaBC 217661..218860 (-) 1200 WP_020839956.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ACK2V4_RS01005 (ACK2V4_01005) - 219045..220718 (+) 1674 WP_062854590.1 methyl-accepting chemotaxis protein -
  ACK2V4_RS01010 (ACK2V4_01010) radC 220832..221506 (+) 675 WP_005482037.1 RadC family protein Machinery gene
  ACK2V4_RS01015 (ACK2V4_01015) rpmB 221810..222046 (+) 237 WP_005467944.1 50S ribosomal protein L28 -
  ACK2V4_RS01020 (ACK2V4_01020) rpmG 222060..222230 (+) 171 WP_004410866.1 50S ribosomal protein L33 -
  ACK2V4_RS01025 (ACK2V4_01025) - 222406..222882 (+) 477 WP_021451729.1 hypothetical protein -
  ACK2V4_RS01030 (ACK2V4_01030) mutM 222985..223794 (+) 810 WP_062854589.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ACK2V4_RS01035 (ACK2V4_01035) coaD 223891..224373 (+) 483 WP_005462497.1 pantetheine-phosphate adenylyltransferase -
  ACK2V4_RS01040 (ACK2V4_01040) - 224360..225295 (+) 936 WP_062854588.1 glycosyl transferase family 90 -
  ACK2V4_RS01045 (ACK2V4_01045) - 225344..226132 (-) 789 WP_025503782.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25334.11 Da        Isoelectric Point: 6.6112

>NTDB_id=968026 ACK2V4_RS01010 WP_005482037.1 220832..221506(+) (radC) [Vibrio parahaemolyticus strain GTVSS-031]
MILKALPNESMPREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=968026 ACK2V4_RS01010 WP_005482037.1 220832..221506(+) (radC) [Vibrio parahaemolyticus strain GTVSS-031]
ATGATACTCAAAGCTTTGCCAAATGAGTCGATGCCACGAGAGAAACTTCTGCAACGTGGGCCGCAGGCGTTAACCGATGC
CGAATTACTGGCGATATTCCTCCGTACGGGCACGCAAGGCATGAACGTGATTGAGTTGGCCGATTTCCTTATTCAAGATT
TTGGTTCGCTTAGGCAGTTGTTCTCCGCTTCAGAACAGGAGTTTTGTCAGCATAAAGGGTTAGGGCAGGCCAAATATGTG
CAATTGCAAGCGGTGTTAGAAATGACTCAGCGATATTTGGCGGAAACCCTCAAGCGTGGCGACGCCTTAACCAGCCCTGA
GCAAACTAAATTATATCTTTCCTCTATATTAAGAGACCGCCAAAGAGAGGCTTTTTACATTCTTTTCCTCGATAACCAAC
ACCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACCTTGGATGCCGCATCAGTTTACCCTAGAGAAGTAGTAAAAAGA
GCCCTGCACCACAACGCGGCTGCTTTGATTTTGGCGCATAACCACCCGTCCGGTGTTGCCGAGCCAAGCCAGGCAGACCG
CAGGATTACAAGGCGATTAATTGATGCGTTGGCGCTGGTGGATATTCGTATTTTGGACCATTTCGTTATTGGCGATGGGG
AAAGTGTCTCTTTTGCTGAAAGAGGATGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87T86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.613

96.875

0.5
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.739

99.107

0.384

Multiple sequence alignment