Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MKY10_RS12980 Genome accession   NZ_CP150253
Coordinates   2492617..2493396 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. FSL P4-0290     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2487617..2498396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY10_RS12950 (MKY10_12950) fliH 2487630..2488382 (-) 753 WP_044052687.1 flagellar assembly protein FliH -
  MKY10_RS12955 (MKY10_12955) fliG 2488375..2489391 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  MKY10_RS12960 (MKY10_12960) fliF 2489404..2491019 (-) 1616 Protein_2501 flagellar basal-body MS-ring/collar protein FliF -
  MKY10_RS12965 (MKY10_12965) fliE 2491065..2491385 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  MKY10_RS12970 (MKY10_12970) flgC 2491396..2491848 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  MKY10_RS12975 (MKY10_12975) flgB 2491848..2492237 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  MKY10_RS12980 (MKY10_12980) codY 2492617..2493396 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MKY10_RS12985 (MKY10_12985) hslU 2493436..2494848 (-) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  MKY10_RS12990 (MKY10_12990) clpQ 2494856..2495401 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  MKY10_RS12995 (MKY10_12995) xerC 2495414..2496328 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  MKY10_RS13000 (MKY10_13000) trmFO 2496396..2497703 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=967973 MKY10_RS12980 WP_003220850.1 2492617..2493396(-) (codY) [Bacillus sp. FSL P4-0290]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=967973 MKY10_RS12980 WP_003220850.1 2492617..2493396(-) (codY) [Bacillus sp. FSL P4-0290]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment