Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NYE20_RS09050 Genome accession   NZ_CP150252
Coordinates   1702907..1703686 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. FSL R5-0416     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1697907..1708686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE20_RS09030 (NYE20_09030) trmFO 1698600..1699907 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYE20_RS09035 (NYE20_09035) xerC 1699975..1700889 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  NYE20_RS09040 (NYE20_09040) clpQ 1700902..1701447 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  NYE20_RS09045 (NYE20_09045) hslU 1701455..1702867 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  NYE20_RS09050 (NYE20_09050) codY 1702907..1703686 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NYE20_RS09055 (NYE20_09055) flgB 1704066..1704455 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  NYE20_RS09060 (NYE20_09060) flgC 1704455..1704907 (+) 453 WP_161621574.1 flagellar basal body rod protein FlgC -
  NYE20_RS09065 (NYE20_09065) fliE 1704918..1705238 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  NYE20_RS09070 (NYE20_09070) fliF 1705284..1706894 (+) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  NYE20_RS09075 (NYE20_09075) fliG 1706907..1707923 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NYE20_RS09080 (NYE20_09080) fliH 1707916..1708668 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=967874 NYE20_RS09050 WP_003220850.1 1702907..1703686(+) (codY) [Bacillus sp. FSL R5-0416]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=967874 NYE20_RS09050 WP_003220850.1 1702907..1703686(+) (codY) [Bacillus sp. FSL R5-0416]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCAGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment