Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NYE53_RS08750 Genome accession   NZ_CP150251
Coordinates   1687726..1688505 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. FSL R5-0523     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1682726..1693505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE53_RS08730 (NYE53_08730) trmFO 1683419..1684726 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYE53_RS08735 (NYE53_08735) xerC 1684794..1685708 (+) 915 WP_339248219.1 tyrosine recombinase XerC -
  NYE53_RS08740 (NYE53_08740) clpQ 1685721..1686266 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  NYE53_RS08745 (NYE53_08745) hslU 1686274..1687686 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  NYE53_RS08750 (NYE53_08750) codY 1687726..1688505 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NYE53_RS08755 (NYE53_08755) flgB 1688885..1689274 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  NYE53_RS08760 (NYE53_08760) flgC 1689274..1689726 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  NYE53_RS08765 (NYE53_08765) fliE 1689737..1690057 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  NYE53_RS08770 (NYE53_08770) fliF 1690103..1691713 (+) 1611 WP_213419594.1 flagellar basal-body MS-ring/collar protein FliF -
  NYE53_RS08775 (NYE53_08775) fliG 1691726..1692742 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NYE53_RS08780 (NYE53_08780) fliH 1692735..1693487 (+) 753 WP_251187111.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=967795 NYE53_RS08750 WP_003220850.1 1687726..1688505(+) (codY) [Bacillus sp. FSL R5-0523]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=967795 NYE53_RS08750 WP_003220850.1 1687726..1688505(+) (codY) [Bacillus sp. FSL R5-0523]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTCATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTAGAGGATCGTCAATTCCCTGAAGAATATACGAAAAACCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAACTTGACGGAAATGAAGGTCTTCTAGTTGCAAGTAAAATCGCTGACCGTGTGGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment