Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ACJX3V_RS07520 Genome accession   NZ_CP176523
Coordinates   1477628..1478077 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1472628..1483077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS07480 ctaE 1472758..1473381 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  ACJX3V_RS07485 ctaF 1473384..1473716 (+) 333 WP_003154481.1 cytochrome c oxidase subunit IVB -
  ACJX3V_RS07490 ctaG 1473741..1474625 (+) 885 WP_003154480.1 cytochrome c oxidase assembly factor CtaG -
  ACJX3V_RS07495 - 1474659..1475018 (-) 360 WP_003154479.1 YugN family protein -
  ACJX3V_RS07500 - 1475159..1475602 (+) 444 WP_003154478.1 CBS domain-containing protein -
  ACJX3V_RS07505 - 1475687..1476727 (+) 1041 WP_048367228.1 CAP domain-containing protein -
  ACJX3V_RS07510 - 1476892..1477302 (+) 411 WP_014304959.1 YlbD family protein -
  ACJX3V_RS07515 - 1477318..1477557 (+) 240 WP_003154475.1 YlbE-like family protein -
  ACJX3V_RS07520 ylbF 1477628..1478077 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  ACJX3V_RS07525 - 1478136..1478408 (+) 273 WP_003154470.1 YlbG family protein -
  ACJX3V_RS07530 - 1478499..1478708 (+) 210 WP_015388275.1 hypothetical protein -
  ACJX3V_RS07535 rsmD 1478708..1479262 (+) 555 WP_003154468.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACJX3V_RS07540 coaD 1479267..1479749 (+) 483 WP_043867073.1 pantetheine-phosphate adenylyltransferase -
  ACJX3V_RS07545 ylbJ 1479768..1480994 (-) 1227 WP_044053185.1 sporulation integral membrane protein YlbJ -
  ACJX3V_RS07550 - 1481174..1481953 (+) 780 WP_015388274.1 patatin family protein -
  ACJX3V_RS07555 sepM 1481959..1482981 (+) 1023 WP_003154464.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=967378 ACJX3V_RS07520 WP_003154472.1 1477628..1478077(+) (ylbF) [Bacillus amyloliquefaciens strain MEPW12]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=967378 ACJX3V_RS07520 WP_003154472.1 1477628..1478077(+) (ylbF) [Bacillus amyloliquefaciens strain MEPW12]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAACAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTCGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879