Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ACJPHY_RS24870 Genome accession   NZ_CP176424
Coordinates   5361449..5361973 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain IGLPR01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5356449..5366973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJPHY_RS24855 aroB 5357565..5358671 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  ACJPHY_RS24860 aroK 5358721..5359239 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACJPHY_RS24865 pilQ 5359251..5361395 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  ACJPHY_RS24870 comL/pilP 5361449..5361973 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACJPHY_RS24875 pilO 5361970..5362593 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJPHY_RS24880 pilN 5362590..5363186 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACJPHY_RS24885 pilM 5363186..5364250 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACJPHY_RS24890 - 5364435..5366906 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=966963 ACJPHY_RS24870 WP_003095836.1 5361449..5361973(-) (comL/pilP) [Pseudomonas aeruginosa strain IGLPR01]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=966963 ACJPHY_RS24870 WP_003095836.1 5361449..5361973(-) (comL/pilP) [Pseudomonas aeruginosa strain IGLPR01]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362