Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACKWPP_RS11270 Genome accession   NZ_CP176418
Coordinates   2256844..2258130 (+) Length   428 a.a.
NCBI ID   WP_409373980.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2251844..2263130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS11240 (ACKWPP_11240) - 2252624..2253340 (-) 717 WP_409373978.1 DUF554 domain-containing protein -
  ACKWPP_RS11245 (ACKWPP_11245) - 2253344..2254090 (-) 747 WP_024401045.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ACKWPP_RS11250 (ACKWPP_11250) prmA 2254092..2255045 (-) 954 WP_024401044.1 50S ribosomal protein L11 methyltransferase -
  ACKWPP_RS11255 (ACKWPP_11255) - 2255613..2255966 (-) 354 WP_024401043.1 ASCH domain-containing protein -
  ACKWPP_RS11260 (ACKWPP_11260) - 2255968..2256438 (-) 471 WP_409373979.1 DUF3013 family protein -
  ACKWPP_RS11265 (ACKWPP_11265) - 2256440..2256775 (-) 336 WP_205029588.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  ACKWPP_RS11270 (ACKWPP_11270) rarA 2256844..2258130 (+) 1287 WP_409373980.1 replication-associated recombination protein A Machinery gene
  ACKWPP_RS11285 (ACKWPP_11285) nrdG 2258611..2259168 (-) 558 WP_409373981.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  ACKWPP_RS11290 (ACKWPP_11290) - 2259355..2259849 (-) 495 WP_409373982.1 GNAT family N-acetyltransferase -
  ACKWPP_RS11295 (ACKWPP_11295) - 2259851..2261198 (-) 1348 Protein_2188 bifunctional metallophosphatase/5'-nucleotidase -
  ACKWPP_RS11300 (ACKWPP_11300) - 2261200..2261334 (-) 135 WP_014638808.1 hypothetical protein -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 47340.86 Da        Isoelectric Point: 6.2402

>NTDB_id=966890 ACKWPP_RS11270 WP_409373980.1 2256844..2258130(+) (rarA) [Streptococcus suis strain KKAHC02]
MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLQTSHIQQALE
LALTDSKRGFDFPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
VDLALSPKSNSAYQAMDAALADLRENGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLHADYFTA
NDTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=966890 ACKWPP_RS11270 WP_409373980.1 2256844..2258130(+) (rarA) [Streptococcus suis strain KKAHC02]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCAAAATCCATTGATGAAGTCATCGGTCAGGAACACCTGGTCGGTCCTGG
AAAGATTATCCGTCGCATGATCGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCGGGGATTGGCAAGACCT
CGATTGCGTCCGCCATTGCTGGTACGACCAAGTATGCCTTTCGAACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAAGCTAAATTTTCTGGTGGCCTGGTCCTCATGCTCGATGAAATCCACCGTCTCAACAAGACCAA
GCAAGACTTTCTACTTCCTCTTTTGGAAAATGGTAATATCATCATGATTGGGGCAACGACTGAAAATCCCTTCTTCTCAA
TTTTACCTGCCATTCGCAGTCGGGTGCAGATTTTTGAATTGCAGCCTTTGCAAACCAGCCACATCCAACAAGCCTTGGAA
CTGGCTCTGACAGACAGCAAGCGTGGTTTTGATTTCCCTGTCACCATTGAGCCTGAGGCTCTGGACTTCCTAGCTAATGC
TACCAACGGTGACCTGCGTGCCGCCTATAATTCGCTAGAATTAGCTGTGCTTTCGACCAAAGAAAGCGACGATGGTAGTC
GCCACATCGACCTAGATGCTGTGGAAAATAGCCTGCAAAAATCCTACATCAGTATGGACAAGAACGGCGATGCCCACTAC
GACATCCTCTCGGCTCTGCAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGA
GGCGGAAGACCTGCCTAGTCTGGCTCGTCGCTTGACAGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCTC
AGATTCATACGGTGACGGCCCTTGAAGCCGCCCAGAAAATCGGATTTCCAGAGGCACGCATTTTAATTGCCAATGTGGTA
GTCGATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCAGGCTATGGATGCAGCTCTGGCTGATTTGCGGGAAAACGG
TCATCTGCCTATTCCAAATCACCTGCGAGACGGTCATTATGCGGGTAGTAAGGAGCTGGGAAATGCCATTGGCTACCAGT
ATCCGCATGCCTATCCTGAAAAATGGGTGGACCAGCAATACCTGCCCGATAAGTTACTTCATGCGGACTACTTCACCGCC
AACGACACCGGCAAATACGAGCGTGCCTTGGGTATGACCCAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAA
TCCTTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.33

97.664

0.579